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Sedimentary DNA tracks decadal-centennial changes in fish abundance

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Far too little is known about the long-term dynamics of populations for almost all macro-organisms. Here, we examined the utility of sedimentary DNA techniques to reconstruct the dynamics in the… Click to show full abstract

Far too little is known about the long-term dynamics of populations for almost all macro-organisms. Here, we examined the utility of sedimentary DNA techniques to reconstruct the dynamics in the “abundance” of a species, which has not been previously defined. We used fish DNA in marine sediments and examined whether it could be used to track the past dynamics of pelagic fish abundance in marine waters. Quantitative PCR for sedimentary DNA was applied on sediment-core samples collected from anoxic bottom sediments in Beppu Bay, Japan. The DNA of three dominant fish species (anchovy, sardine, and jack mackerel) were quantified in sediment sequences spanning the last 300 years. Temporal changes in fish DNA concentrations are consistent with those of landings in Japan for all three species and with those of sardine fish scale concentrations. Thus, sedimentary DNA could be used to track decadal-centennial dynamics of fish abundance in marine waters. Michinobu Kuwae et al. reconstruct the past dynamics of pelagic fish abundance in Beppu Bay of Japan, using sedimentary DNA. This study demonstrates the utility of sedimentary DNA in investigating the history of fish abundance in marine waters.

Keywords: dna; changes fish; sedimentary dna; decadal centennial; fish abundance

Journal Title: Communications Biology
Year Published: 2020

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