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γ‐(S)‐Guanidinylmethyl‐Modified Triplex‐Forming Peptide Nucleic Acids Increase Hoogsteen‐Face Affinity for a MicroRNA and Enhance Cellular Uptake

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γ‐Modified (i.e., (S)‐aminomethyl, (S)‐acetamidomethyl, (R)‐4‐(hydroxymethyl)triazol‐1‐ylmethyl, and (S)‐guanidinylmethyl) triplex‐forming peptide nucleic acids (TFPNAs) were synthesized and the effect of the backbone modifications on the binding to a miR‐215 model was studied.… Click to show full abstract

γ‐Modified (i.e., (S)‐aminomethyl, (S)‐acetamidomethyl, (R)‐4‐(hydroxymethyl)triazol‐1‐ylmethyl, and (S)‐guanidinylmethyl) triplex‐forming peptide nucleic acids (TFPNAs) were synthesized and the effect of the backbone modifications on the binding to a miR‐215 model was studied. Among the modifications, an appropriate pattern of three γ‐(S)‐guanidinylmethyl modifications increased the affinity and Hoogsteen‐face selectivity for the miR‐215 model without ternary (PNA)2/RNA complex formation. Moreover, the γ‐(S)‐guanidinylmethyl groups were observed to facilitate internalization of the TFPNAs into living PC‐3 prostate cancer cells.

Keywords: nucleic acids; peptide nucleic; guanidinylmethyl; forming peptide; hoogsteen face; triplex forming

Journal Title: ChemBioChem
Year Published: 2019

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