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Multi‐target Fragments Display Versatile Binding Modes

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Promiscuity is an interesting concept in fragment‐based drug design as fragments with low specificity can be advantageous for finding many screening hits. We present a PDB‐wide analysis of multi‐target fragments… Click to show full abstract

Promiscuity is an interesting concept in fragment‐based drug design as fragments with low specificity can be advantageous for finding many screening hits. We present a PDB‐wide analysis of multi‐target fragments and their binding mode conservation. Focussing on multi‐target fragments, we found that the majority shows non‐conserved binding modes, even if they bind in a similar conformation or similar protein targets. Surprisingly, fragment properties alone are not able to predict whether a fragment will exhibit a versatile or conserved binding mode, emphasizing the interplay between protein and fragment features during a binding event and the importance of structure‐based modelling.

Keywords: fragments display; target fragments; binding modes; display versatile; multi target

Journal Title: Molecular Informatics
Year Published: 2017

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