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Fast automatic segmentation of thalamic nuclei from MP2RAGE acquisition at 7 Tesla

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Thalamic nuclei are largely invisible in conventional MRI due to poor contrast. Thalamus Optimized Multi‐Atlas Segmentation (THOMAS) provides automatic segmentation of 12 thalamic nuclei using white‐matter‐nulled (WMn) Magnetization Prepared Rapid… Click to show full abstract

Thalamic nuclei are largely invisible in conventional MRI due to poor contrast. Thalamus Optimized Multi‐Atlas Segmentation (THOMAS) provides automatic segmentation of 12 thalamic nuclei using white‐matter‐nulled (WMn) Magnetization Prepared Rapid Gradient Echo (MPRAGE) sequence at 7T, but increases overall scan duration. Routinely acquired, bias‐corrected Magnetization Prepared 2 Rapid Gradient Echo (MP2RAGE) sequence yields superior tissue contrast and quantitative T1 maps. Application of THOMAS to MP2RAGE has been investigated in this study.

Keywords: thalamic nuclei; mp2rage; segmentation; segmentation thalamic; fast automatic; automatic segmentation

Journal Title: Magnetic Resonance in Medicine
Year Published: 2020

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