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Epistasis Analysis: Classification Through Machine Learning Methods.

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Complex disease is different from Mendelian disorders. Its development usually involves the interaction of multiple genes or the interaction between genes and the environment (i.e. epistasis). Although the high-throughput sequencing technologies… Click to show full abstract

Complex disease is different from Mendelian disorders. Its development usually involves the interaction of multiple genes or the interaction between genes and the environment (i.e. epistasis). Although the high-throughput sequencing technologies for complex diseases have produced a large amount of data, it is extremely difficult to analyze the data due to the high feature dimension and the combination in the epistasis analysis. In this work, we introduce machine learning methods to effectively reduce the gene dimensionality, retain the key epistatic effects, and effectively characterize the relationship between epistatic effects and complex diseases.

Keywords: machine learning; epistasis analysis; epistasis; learning methods

Journal Title: Methods in molecular biology
Year Published: 2021

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