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A Gene Ontology Tutorial in Python.

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This chapter is a tutorial on using Gene Ontology resources in the Python programming language. This entails querying the Gene Ontology graph, retrieving Gene Ontology annotations, performing gene enrichment analyses,… Click to show full abstract

This chapter is a tutorial on using Gene Ontology resources in the Python programming language. This entails querying the Gene Ontology graph, retrieving Gene Ontology annotations, performing gene enrichment analyses, and computing basic semantic similarity between GO terms. An interactive version of the tutorial, including solutions, is available at http://gohandbook.org .

Keywords: ontology; ontology tutorial; tutorial python; biology; gene; gene ontology

Journal Title: Methods in molecular biology
Year Published: 2017

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