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Parameterized Algorithmics for Finding Exact Solutions of NP-Hard Biological Problems.

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Fixed-parameter algorithms are designed to efficiently find optimal solutions to some computationally hard (NP-hard) problems by identifying and exploiting "small" problem-specific parameters. We survey practical techniques to develop such algorithms.… Click to show full abstract

Fixed-parameter algorithms are designed to efficiently find optimal solutions to some computationally hard (NP-hard) problems by identifying and exploiting "small" problem-specific parameters. We survey practical techniques to develop such algorithms. Each technique is introduced and supported by case studies of applications to biological problems, with additional pointers to experimental results.

Keywords: algorithmics finding; biological problems; finding exact; parameterized algorithmics; solutions hard; exact solutions

Journal Title: Methods in molecular biology
Year Published: 2017

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