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SH2 Ligand Prediction-Guidance for In-Silico Screening.

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Systematic identification of binding partners for SH2 domains is important for understanding the biological function of the corresponding SH2 domain-containing proteins. Here, we describe two different web-accessible computer programs, SMALI… Click to show full abstract

Systematic identification of binding partners for SH2 domains is important for understanding the biological function of the corresponding SH2 domain-containing proteins. Here, we describe two different web-accessible computer programs, SMALI and DomPep, for predicting binding ligands for SH2 domains. The former was developed using a Scoring Matrix method and the latter based on the Support Vector Machine model.

Keywords: prediction guidance; guidance silico; silico screening; biology; sh2 ligand; ligand prediction

Journal Title: Methods in molecular biology
Year Published: 2017

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