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Evaluation of Whole Genome Sequencing Data.

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Whole genome sequencing (WGS) can provide comprehensive insights into the genetic makeup of lymphomas. Here we describe a selection of methods for the analysis of WGS data, including alignment, identification… Click to show full abstract

Whole genome sequencing (WGS) can provide comprehensive insights into the genetic makeup of lymphomas. Here we describe a selection of methods for the analysis of WGS data, including alignment, identification of different classes of genomic variants, the identification of driver mutations, and the identification of mutational signatures. We further outline design considerations for WGS studies and provide a variety of quality control measures to detect common quality problems in the data.

Keywords: sequencing data; whole genome; evaluation whole; biology; genome sequencing

Journal Title: Methods in molecular biology
Year Published: 2019

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