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Aptamer truncation strategy assisted by molecular docking and sensitive detection of T-2 toxin using SYBR Green I as a signal amplifier.

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Herein, for the first time, a novel truncation strategy for aptamers' sequences based on molecular docking was reported for the first time. T-2 toxin and AFB1 aptamers were employed as… Click to show full abstract

Herein, for the first time, a novel truncation strategy for aptamers' sequences based on molecular docking was reported for the first time. T-2 toxin and AFB1 aptamers were employed as models and fluorescence polarization was used to measure the affinity of aptamers. The T-2 toxin aptamer (T40) with 40 bases and the AFB1 aptamer with 32 bases were successfully obtained with increased affinities compared with original aptamers. Meanwhile, circular dichroism, FAM-BHQ1 dual labeled T40, enzyme digestion, and molecular dynamics simulation were performed to investigate the binding mechanism between aptamer T40 and T-2 toxin. Finally, based on MnO2 nanosheet and the fluorescence amplification effect of SYBR Green I, simplified and rapid fluorescence detection of T-2 toxin was achieved with a detection range of 0.03 nM to 30 nM, indicating the great potential of aptamer in practical detection applications.

Keywords: sybr green; truncation strategy; detection toxin; toxin; detection; molecular docking

Journal Title: Food chemistry
Year Published: 2022

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