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Sequencing of Small DNA Fragments with Aggregated-Induced-Emission Molecule Labelled Nucleotides.

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Sequencing by synthesis is a significant method for high-throughput DNA sequencing. Herein, we synthesized terminal aggregated-induced-emission luminogen (AIEgen) labelled nucleotides (dNTPs-HCAP) that could serve as substrates for some polymerases and… Click to show full abstract

Sequencing by synthesis is a significant method for high-throughput DNA sequencing. Herein, we synthesized terminal aggregated-induced-emission luminogen (AIEgen) labelled nucleotides (dNTPs-HCAP) that could serve as substrates for some polymerases and applied them into the sequencing of small DNA fragments. In the process of DNA amplification, ratiometric AIEgens are released from dNTPs-HCAP and aggregate through the effects of phosphatase, which results in changes in the ratiometric fluorescent signals. With the AIEgen-labelled nucleotides, we accomplished the sequencing of a small DNA fragment through double changes in fluorescence. In addition, we achieved the differentiation of single nucleotide polymorphisms through rolling circle amplification reactions without the addition of signal probes, which is fast and cost-effective. The introduction of ratiometric AIEgens into DNA synthesis makes the detection of DNA sequences more efficient and accurate. Therefore, the development of AIEgen-labelled nucleotides is meaningful for the study of DNA sequencing methods.

Keywords: labelled nucleotides; dna; sequencing small; small dna; aggregated induced; induced emission

Journal Title: Analytical chemistry
Year Published: 2020

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