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Aptamer displacement reaction from live-cell surfaces and its applications.

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The DNA strand displacement reaction has had sustained scientific interest in building complicated nucleic acid-based net-works. However, extending the fundamental mechanism to more diverse biomolecules in a complex environment remains… Click to show full abstract

The DNA strand displacement reaction has had sustained scientific interest in building complicated nucleic acid-based net-works. However, extending the fundamental mechanism to more diverse biomolecules in a complex environment remains challenging. Aptamers bind with targeted biomolecules with high affinity and selectivity, thus offering a promising route to link the powers of nucleic acid with diverse cues. Here, we describe three methods that allow facile and efficient displace-ment reaction of aptamer from the living cell surface using complement DNA (cDNA), toehold-labeled cDNA (tcDNA), and single-stranded binding protein (SSB). The kinetics of DNA strand displacement reaction is severely affected by complex physicochemical properties of the natural membrane. Toehold-mediated and SSB-mediated aptamer displacement exhibit-ed significantly enhanced kinetics, and they completely removed the aptamer quickly to avoid a false signal caused by ap-tamer internalization. Because of its simplicity, aptamer displacement enabled detection of membrane protein post-translation and improved selection efficiency of cell-SELEX.

Keywords: aptamer displacement; live cell; displacement reaction; reaction; reaction live

Journal Title: Journal of the American Chemical Society
Year Published: 2019

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