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Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking

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We sought to determine the significance of myeloid clonal hematopoiesis (CH) in the UK Biobank cohort ( n  = 502,524, median age = 58 years). Utilizing SNP array ( n  = 486,941) and whole… Click to show full abstract

We sought to determine the significance of myeloid clonal hematopoiesis (CH) in the UK Biobank cohort ( n  = 502,524, median age = 58 years). Utilizing SNP array ( n  = 486,941) and whole exome sequencing data ( n  = 49,956), we identified 1166 participants with myeloid CH, defined by myeloid-associated mosaic chromosome abnormalities (mCA) and/or likely somatic driver mutations in DNMT3A , TET2 , ASXL1 , JAK2 , SRSF2 , or PPM1D . Myeloid CH increased by 1.1-fold per annum (myeloid mCA, P  = 1.57 × 10 −38 ; driver mutations, P  = 5.89 × 10 −47 ). Genome-wide association analysis identified two distinct signals within TERT that predisposed to myeloid CH, plus a weaker signal corresponding to the JAK2 46/1 haplotype. Specific subtypes of myeloid CH were associated with several blood features and clinical phenotypes, including TET2 mutations and chronic obstructive pulmonary disease. Smoking history was significantly associated with myeloid CH: 53% of myeloid CH cases were smokers compared to 44% of controls ( P  = 3.38 × 10 −6 ), a difference principally due to current (OR = 1.10; P  = 6.14 × 10 −6 ) rather than past smoking ( P  = 0.08). Breakdown of CH by specific mutation type revealed that ASXL1 loss of function mutations were most strongly associated with current smoking status (OR = 1.07; P  = 1.92 × 10 −5 ), and the only abnormality associated with past smoking (OR = 1.04; P  = 0.0026). We suggest that the inflammatory environment induced by smoking may promote the outgrowth of ASXL1 -mutant clones.

Keywords: asxl1; smoking; biobank cohort; strongly associated; mutations strongly

Journal Title: Leukemia
Year Published: 2020

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