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gga-miRNOME, a microRNA-sequencing dataset from chick embryonic tissues

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MicroRNAs (miRNAs) are small non-coding RNA molecules, with sizes ranging from 18 to 25 nucleotides, which are key players in gene expression regulation. These molecules play an important role in… Click to show full abstract

MicroRNAs (miRNAs) are small non-coding RNA molecules, with sizes ranging from 18 to 25 nucleotides, which are key players in gene expression regulation. These molecules play an important role in fine-tuning early vertebrate embryo development. However, there are scarce publicly available miRNA datasets from non-mammal embryos, such as the chicken ( Gallus gallus ), which is a classical model system to study vertebrate embryogenesis. Here, we performed microRNA-sequencing to characterize the early stages of trunk and limb development in the chick embryo. For this, we profiled three chick embryonic tissues, namely, Undetermined Presomitic Mesoderm (PSM_U), Determined Presomitic Mesoderm (PSM_D) and Forelimb Distal Cyclic Domain (DCD). We identified 926 known miRNAs, and 1,141 novel candidate miRNAs, which nearly duplicates the number of Gallus gallus entries in the miRBase database. These data will greatly benefit the avian research community, particularly by highlighting new miRNAs potentially involved in the regulation of early vertebrate embryo development, that can be prioritized for further experimental testing. Measurement(s) miRNA Technology Type(s) microRNA profiling assay Factor Type(s) embryonic tissue Sample Characteristic - Organism Gallus gallus Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.17173127

Keywords: gga mirnome; embryonic tissues; gallus gallus; chick embryonic; microrna sequencing

Journal Title: Scientific Data
Year Published: 2022

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