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De novo sequencing and construction of a unique antibody for the recognition of alternative conformations of cytochrome c in cells

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Significance Cytochrome c (cyt c) is an abundant heme protein that, in its native conformation, plays essential roles in mitochondrial bioenergetics and apoptotic signaling in mammalian cells. The dynamic properties… Click to show full abstract

Significance Cytochrome c (cyt c) is an abundant heme protein that, in its native conformation, plays essential roles in mitochondrial bioenergetics and apoptotic signaling in mammalian cells. The dynamic properties of cyt c confers substantial plasticity to produce alternative conformations in vitro, but their detection in cellula remains essentially unexplored. We have restored by de novo sequencing a unique monoclonal antibody (R1D3) recognizing conformationally altered cyt c proteoforms. R1D3 application to different cell models showed that alternative cyt c conformers are translocated from mitochondria to the nuclei without triggering apoptosis. R1D3 represents a unique immunochemical tool for mitochondrial and cell biology, encompassing knowledge of protein dynamics and plasticity with the identification of noncanonical structures and functions of cyt c in vivo.

Keywords: alternative conformations; construction unique; novo sequencing; unique antibody; sequencing construction

Journal Title: Proceedings of the National Academy of Sciences of the United States of America
Year Published: 2022

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