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Phylogenetic analyses of 41 Y-STRs and machine learning-based haplogroup prediction in the Qingdao Han population from Shandong Province, Eastern China.

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Background:Known for its rich history and culture, Qingdao is a typical symbol of Chinese maritime culture. Its unique genetic landscape aroused interest among geneticists and forensic scientists. However, the genetic… Click to show full abstract

Background:Known for its rich history and culture, Qingdao is a typical symbol of Chinese maritime culture. Its unique genetic landscape aroused interest among geneticists and forensic scientists. However, the genetic landscape of Qingdao has never been uncovered.Aim:This investigation intends to provide light on Qingdao's paternal genetic diversity and its evolutionary connections to other Han subgroups.Subjects and methods:The genetic polymorphisms of 41 Y-chromosomal short tandem repeat (STR) loci in the Qingdao Han were investigated using SureID® PathFinder Plus Kit. Phylogenetic studies were performed using genotype data from 52 East Asian groups at 23 common Y-STR loci. A multidimensional scaling plot and cladogram were constructed. Linear Discriminant Analysis (LDA) was carried out for predicting categories among the Han people. The k-nearest neighbor (kNN) algorithm was utilised to designate Y-SNP haplogroups for each haplotype.Results:The Qingdao Han was genetically far from the Tibeto-Burman populations and was close with the Han people from northern China. LDA indicated a deep integration among the present-day Han people. By the kNN model, the predicted O2a2 and O2a1 were shown to be the predominant Y-SNP haplogroups.Conclusions:This study would be helpful for reconstructing the patrilineal history in China and establishing a more comprehensive Y-STR database.

Keywords: analyses strs; phylogenetic analyses; han people; china; qingdao; qingdao han

Journal Title: Annals of human biology
Year Published: 2023

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