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Diversity of Cronobacter genus isolated between 1970-2019 on the American continent and genotyped using multi-locus sequence typing.

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This study aimed to evaluate the Cronobacter spp. strains isolated on the American continent and characterized using multi-locus sequence typing (MLST) available in the PubMLST database and current literature. From… Click to show full abstract

This study aimed to evaluate the Cronobacter spp. strains isolated on the American continent and characterized using multi-locus sequence typing (MLST) available in the PubMLST database and current literature. From 465 Cronobacter spp. strains, the majority (n = 267, 57.4%) was from North America, mainly from USA (n = 234), and 198 (42.6%) were from South America, mainly from Brazil (n = 196). Two hundred thirty-two (49.9%) were isolated from foods, 102 (21.9%) from environmental, 87 (18.7%) from clinical, 27 (5.8%) from PIF, one from water (0.2%), and 16 (3.5%) from unknown sources. Five species were represented: C. sakazakii (374, 80.4%), C. malonaticus (41, 8.8%), C. dublinensis (29, 6.2%), C. turicensis (16, 3.5%), and C. muytjensii (5, 1.1%). The strains with complete MLST profile (n = 345) were assigned to 98 STs, a ratio of 3.5 strain by ST found, and the calculated Simpson`s index was 0.93. The strains showed a high diversity and after eBURST analysis, 30 STs (n = 189) formed 12 single and/or double-locus variant clonal complexes (CC). Thirty-eight STs (38.7%) were associated with clinical cases of infection, including well established C. sakazakii CC 1, 4, 8 and 83; C. malonaticus ST60, 307, 394 and 440; and C. sakazakii ST 12 and 494.

Keywords: using multi; american continent; multi locus; locus; locus sequence; sequence typing

Journal Title: FEMS microbiology letters
Year Published: 2021

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