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Antimicrobial resistance pattern, virulence determinants and molecular analysis of carbapenem resistant Klebsiella pneumoniae isolated from clinical samples in Iran.

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Carbapenem-resistant Klebsiella pneumoniae (CRKP) has emerged as an important global threats in recent years. The objective of present study was to characterize the molecular characteristic, antibiotic resistance pattern and the… Click to show full abstract

Carbapenem-resistant Klebsiella pneumoniae (CRKP) has emerged as an important global threats in recent years. The objective of present study was to characterize the molecular characteristic, antibiotic resistance pattern and the distribution of virulence factors in CRKP isolated from different clinical specimens. A total of 60 clinical CRKP isolates were collected from clinical samples. Based on CLSI (Clinical Laboratory Standards Institute) guidelines, antimicrobial susceptibility testing was assessed by disk diffusion method. Carbapenem and aminoglycoside resistance determinants in addition to virulence genes were inspected by PCR. Molecular characteristics of CRKP isolates were analyzed by Random amplified polymorphic DNA (RAPD) PCR and Enterobacterial repetitive intergenic consensus (ERIC) PCR. All isolates were resistant to imipenem, meropenem, cefoxitin, levofloxacin, cefotaxime, ceftazidime and ciprofloxacin. Resistance to tetracycline, gentamicin and kanamycin were detected in 53%, 75%, and 72% of isolates, respectively. The most common carbapenem resistance genes were OXA-48 (28.5%) and NDM (22%). The most common aminoglycosides resistance gene was aac6´Ib (57%) and aac(3)-IVa (28%). The most prevalent virulence genes were mrkD (82%), entB (62%), and ybts (58%). ERIC and RAPD analyses revealed 55 and 53 different patterns of CRKP isolates, respectively. We conclude that CRKP infections have been associated with different genotypes and the carbapenemase type (OXA-48) and AME gene (aac6´-Ib,) were widely distributed in CRKP isolates in our hospital. Continued compliance with existing phenotypes and genotypes, and strict enforcement of infection control guidelines are recommended approaches for prevention and dissemination of these strains.

Keywords: carbapenem resistant; klebsiella pneumoniae; carbapenem; virulence; resistance; resistant klebsiella

Journal Title: FEMS microbiology letters
Year Published: 2022

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