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Logistic Models derived using Lasso Methods for Quantifying the Risk of Natural Contamination of Maize Grain with Deoxynivalenol.

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Models were developed to quantify the risk of deoxynivalenol (DON; ppm) contamination of maize grain based on weather, cultural practices, hybrid resistance, or Gibberella ear rot (GER) intensity. Data on… Click to show full abstract

Models were developed to quantify the risk of deoxynivalenol (DON; ppm) contamination of maize grain based on weather, cultural practices, hybrid resistance, or Gibberella ear rot (GER) intensity. Data on natural DON contamination of 15-16 hybrids and weather were collected from 10 Ohio locations over four years. Logistic regression with 10-fold cross-validation was used to develop models to predict the risk of DON ≥ 1 ppm. The presence and severity of GER predicted DON risk with an accuracy of 0.81 and 0.87, respectively. Temperature, relative humidity, surface wetness, and rainfall were used to generate 37 weather-based predictor variables summarized over each of six 15-day windows relative to maize silking (R1). With these variables, LASSO followed by all-subsets variable selection, and logistic regression with 10-fold cross-validation were used to build single-window weather-based models, from which 11 with one or two predictors were selected based on performance metrics and simplicity. LASSO-logistic regression was also used to build more complex multi-window models with up to 22 predictors. The performance of the best single-window models was comparable to that of the best multi-window models, with accuracy ranging from 0.81 to 0.83 for the former and 0.83 to 0.87 for the latter group of models. These results indicated that the risk of DON ≥ 1 ppm can be accurately predicted with relatively simple models built using temperature- and moisture-based predictors from a single window. These models will serve as the foundation for developing tools to predict the risk of DON contamination of maize grain.

Keywords: maize grain; contamination maize; risk; contamination

Journal Title: Phytopathology
Year Published: 2021

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