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Time-Aware Multi-Type Data Fusion Representation Learning Framework for Risk Prediction of Cardiovascular Diseases.

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Predicting the future risk of cardiovascular diseases from the historical Electronic Health Records (EHRs) is a significant research task in personalized healthcare fields. In recent years, many deep neural network-based… Click to show full abstract

Predicting the future risk of cardiovascular diseases from the historical Electronic Health Records (EHRs) is a significant research task in personalized healthcare fields. In recent years, many deep neural network-based methods have emerged, which model patient disease progression by capturing the temporal patterns in sequential visit data. However, existing methods usually cannot effectively integrate the features of heterogeneous clinical data, and do not fully consider the impact of patients age and irregular time interval between consecutive medical records on the patients disease development. To address these challenges, we propose a Time-Aware Multi-type Data fUsion Representation learning framework (TAMDUR) for CVDs risk prediction. In this framework, we design a time-aware decay function, which is based on the patients age and the elapsed time between visits, to model the disease progression pattern. A parallel combination of Bi LSTM and CNN is constructed to respectively learn the temporal and non-temporal features from various types of clinical data. Finally, a multi-type data fusion representation layer based on self-attention is utilized to integrate various features and their correlations to obtain the final patient representation. We evaluate our model on a real medical dataset, and the experimental results demonstrate that TAMDUR outperforms the state-of-the-art approaches.

Keywords: representation; data fusion; time; time aware; multi type; type data

Journal Title: IEEE/ACM transactions on computational biology and bioinformatics
Year Published: 2021

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