LAUSR.org creates dashboard-style pages of related content for over 1.5 million academic articles. Sign Up to like articles & get recommendations!

Fast Post-Processing Pipeline for Optical Projection Tomography

Photo from wikipedia

To improve the effectiveness and efficiency of optical projection tomography (OPT) 3-D reconstruction, we present a fast post-processing pipeline, including cropping, background subtraction, center of rotation (COR) correction, and 3-D… Click to show full abstract

To improve the effectiveness and efficiency of optical projection tomography (OPT) 3-D reconstruction, we present a fast post-processing pipeline, including cropping, background subtraction, center of rotation (COR) correction, and 3-D reconstruction. Regarding to the COR correction, a novel algorithm based on interest point detection of sinogram is proposed by considering the principle of OPT imaging. Instead of locating the COR on single sinogram, we select equally spaced sinograms in the detected full range of specimen to make the located COR more convincing. The presented post-processing pipeline is implemented in a parallel manner and the experiments show that the average runtime for each image of size $1036 \times 1360 \times 400$ pixels is less than 1 min. To quantify and compare the reconstructed results of different COR correction approaches, the coefficient of variation instead of variance is employed. The results indicate that the proposed COR correction outperforms the three traditional COR alignment approaches in terms of effectiveness and computational complexity.

Keywords: processing pipeline; post processing; cor

Journal Title: IEEE Transactions on NanoBioscience
Year Published: 2017

Link to full text (if available)


Share on Social Media:                               Sign Up to like & get
recommendations!

Related content

More Information              News              Social Media              Video              Recommended



                Click one of the above tabs to view related content.