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Shotgun metagenomics reveal a diverse assemblage of protists in a model Antarctic soil ecosystem.

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The soils of the McMurdo Dry Valleys (MDV) of Antarctica are established models for understanding fundamental processes in soil ecosystem functioning (e.g. ecological tipping points, community structuring, and nutrient cycling)… Click to show full abstract

The soils of the McMurdo Dry Valleys (MDV) of Antarctica are established models for understanding fundamental processes in soil ecosystem functioning (e.g. ecological tipping points, community structuring, and nutrient cycling) because the extreme physical environment drastically reduces biodiversity and ecological complexity. Understanding the functioning of MDV soils requires in-depth knowledge of the diversity of MDV soil species. Protists, which contribute significantly to soil ecosystem functioning worldwide, remain poorly characterized in the MDV. To better assess the diversity of MDV protists, we performed shotgun metagenomics on 18 sites representing a variety of landscape features and edaphic variables. Our results show MDV soil protists are diverse at both the genus (155 of 281 eukaryote genera) and family (120) levels, but comprise only 6% of eukaryotic reads. Protists are structured by moisture, total N, and distance from the local coast, and possess limited richness in arid (<5% moisture) and at high elevation sites, known drivers of communities in the MDV. High relative diversity and broad distribution of protists in our study promotes these organisms as key members of MDV soil microbiomes and the MDV as a useful system for understanding the contribution of soil protists to the structure of soil microbiomes. SIGNIFICANCE: The McMurdo Dry Valley ecosystem is an established model for understanding the relationship between soil biodiversity and fundamental ecosystem processes, but the diversity and physical drivers of protists in this system are poorly understood. This paper lays the groundwork for integrating the biodiversity and ecology of soil protists into a comprehensive ecological framework of the McMurdo Dry Valley ecosystem and contributes to our understanding of the biodiversity of protist communities in polar regions. This article is protected by copyright. All rights reserved.

Keywords: ecosystem; soil ecosystem; biodiversity; soil; mdv; shotgun metagenomics

Journal Title: Environmental microbiology
Year Published: 2020

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