LAUSR

The combined effects of eutrophication, land-use and climate change are major threats to aquatic ecosystems, their biodiversity and integrity in sustaining ecosystem functions. Disentangling the mechanisms by which environmental change contributes to community assembly processes and species niches remains challenging, especially at macro-ecological scales. Here, we collated phytoplankton community data including 853 lakes along a 1200km latitudinal gradient, monitored over four decades, to quantify the spatio-temporal and scale-dependent environmental impacts on species niches and assembly processes while accounting for species traits and phylogenetic constraints. Our results demonstrate the emergence of novel and widespread community composition clusters in previously more uniform communities. While total species richness remained relatively stable, changes in community weighted mean traits of the clusters indicate functional differences. A robust phylogenetic signal of species responses to the environment indicates strong niche conservatism and low taxonomic dispersion. Our findings imply profound spatio-temporal structuring of species co-occurrence patterns and highlight emerging functional differences of lake phytoplankton communities to environmental change over space and time.