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Burden tests can be used to map causal genes for a simple metabolic trait in an exome‐sequenced polyploid mutant population

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genetic screens are excellent tool to assign gene function, but it is often necessary to employ map-based cloning to identify the causal genes. This can be laborious and represents a… Click to show full abstract

genetic screens are excellent tool to assign gene function, but it is often necessary to employ map-based cloning to identify the causal genes. This can be laborious and represents a bottleneck in in DNA it is becoming increasingly afford-able to sequence large populations. Krasileva et al . (2017) exome sequenced tetraploid and hexaploid wheat ethyl methanesul-fonate (EMS) mutagenized populations, primarily to facilitate reverse genetic screens. Gene redundancy allows a very high mutant load of 35 – 40 mutations per kilobase, and the populations of ~ 1500 and ~ 1200 lines each harbour ~ 22 – 23 missense or truncation mutations per gene. Here, we show that burden tests, a simple form of rare-variant association analysis developed for human disease genetics (Lee et al ., 2014), can be used to identify causal genes in the hexaploid wheat ( Triticum aestivum ) cv. Cadenza mutant population, without the need for map-based cloning. power with is ., and in the Cadenza singletons .,

Keywords: burden tests; causal genes; exome sequenced; mutant population

Journal Title: Plant Biotechnology Journal
Year Published: 2022

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