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High-throughput ChIPmentation: freely scalable, single day ChIPseq data generation from very low cell-numbers

BackgroundChromatin immunoprecipitation coupled to sequencing (ChIP-seq) is widely used to map histone modifications and transcription factor binding on a genome-wide level.ResultsWe present high-throughput ChIPmentation (HT-ChIPmentation) that eliminates the need for… Click to show full abstract

BackgroundChromatin immunoprecipitation coupled to sequencing (ChIP-seq) is widely used to map histone modifications and transcription factor binding on a genome-wide level.ResultsWe present high-throughput ChIPmentation (HT-ChIPmentation) that eliminates the need for DNA purification prior to library amplification and reduces reverse-crosslinking time from hours to minutes.ConclusionsThe resulting workflow is easily established, extremely rapid, and compatible with requirements for very low numbers of FACS sorted cells, high-throughput applications and single day data generation.

Keywords: data generation; throughput chipmentation; throughput; single day; high throughput

Journal Title: BMC Genomics
Year Published: 2018

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