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ASPICov was developed to provide a rapid, reliable and complete analysis of NGS SARS-Cov2 samples to the biologist. This broad application tool allows to process samples from either capture or… Click to show full abstract
ASPICov was developed to provide a rapid, reliable and complete analysis of NGS SARS-Cov2 samples to the biologist. This broad application tool allows to process samples from either capture or amplicon strategy and Illumina or Ion Torrent technology. To ensure FAIR data analysis, this Nextflow pipeline follows nf-core guidelines and use Singularity containers. Pipeline is implemented and available at https://gitlab.com/vtilloy/aspicov.
Keywords:
sars cov2;
pipeline;
identification sars;
pipeline identification;
automated pipeline;
aspicov automated
Journal Title: PLoS ONE
Year Published: 2022
Link to full text (if available)
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Journal Title: PLoS ONE
Year Published: 2022
Link to full text (if available)
Share on Social Media: Sign Up to like & get
recommendations!