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An Automated Model for Target Protein Prediction in PPI

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Essential proteins play a crucial role in most of the living organisms. The computer-based task of predicting essential proteins is important for target protein identification, disease treatment and suitable drug… Click to show full abstract

Essential proteins play a crucial role in most of the living organisms. The computer-based task of predicting essential proteins is important for target protein identification, disease treatment and suitable drug development. Traditionally many experimental and centrality measures have been proposed by researchers to predict protein essentiality. The prediction accuracy, sensitivity, specificity identified by the traditional methods is very low. In this research work, a novel computational based approach such as NCKNN model has been proposed to identify the essential proteins. The proposed work uses a combination of network topology measure and machine learning model to predict the essential proteins. The proposed work shows a remarkable improvement than seven traditional centrality based measures such as DC, BC, CC, EC, NC, ECC and SC in terms of the metrics such as accuracy(A1), precision(P1), recall(R1), sensitivity(SE) and specificity(SP).

Keywords: essential proteins; target protein; automated model; model; prediction

Journal Title: Current Bioinformatics
Year Published: 2021

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