DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark
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DOI: 10.1186/s12859-019-3108-7
Abstract: BackgroundXHMM is a widely used tool for copy-number variant (CNV) discovery from whole exome sequencing data but can require hours to days to run for large cohorts. A more scalable implementation would reduce the need… read more here.
Keywords: copy number; spark; apache spark; number variant ... See more keywords