Adaptive sequencing using nanopores and deep learning of mitochondrial DNA
Sign Up to like & getrecommendations! Published in 2022 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbac251
Abstract: Nanopore sequencing is an emerging technology that reads DNA by utilizing a unique method of detecting nucleic acid sequences and identifies the various chemical modifications they carry. Deep learning has increased in popularity as a… read more here.
Keywords: nanopore sequencing; adaptive sequencing; deep learning; mitochondrial dna ... See more keywords
Application of nanopore adaptive sequencing in pathogen detection of a patient with Chlamydia psittaci infection
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Cellular and Infection Microbiology"
DOI: 10.3389/fcimb.2023.1064317
Abstract: Introduction Nanopore sequencing has been widely used in clinical metagenomic sequencing for pathogen detection with high portability and real-time sequencing. Oxford Nanopore Technologies has recently launched an adaptive sequencing function, which can enrich on-target reads… read more here.
Keywords: nanopore adaptive; adaptive sequencing; psittaci; pathogen detection ... See more keywords
Rapid PCR-Based Nanopore Adaptive Sequencing Improves Sensitivity and Timeliness of Viral Clinical Detection and Genome Surveillance
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2022.929241
Abstract: Nanopore sequencing has been widely used for the real-time detection and surveillance of pathogens with portable MinION. Nanopore adaptive sequencing can enrich on-target sequences without additional pretreatment. In this study, the performance of adaptive sequencing… read more here.
Keywords: sensitivity timeliness; surveillance; adaptive sequencing; nanopore adaptive ... See more keywords