Computational Analysis of Protein Tunnels and Channels.
Sign Up to like & getrecommendations! Published in 2018 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7366-8_3
Abstract: Protein tunnels connecting the functional buried cavities with bulk solvent and protein channels, enabling the transport through biological membranes, represent the structural features that govern the exchange rates of ligands, ions, and water solvent. Tunnels… read more here.
Keywords: protein; protein tunnels; tunnels channels; computational analysis ... See more keywords
On-Chip Analysis of Protein Secretion from Single Cells Using Microbead Biosensors.
Sign Up to like & getrecommendations! Published in 2023 at "ACS sensors"
DOI: 10.1021/acssensors.2c02148
Abstract: The profiling of the effector functions of single immune cells─including cytokine secretion─can lead to a deeper understanding of how the immune system operates and to potential diagnostics and therapeutical applications. Here, we report a microfluidic… read more here.
Keywords: secretion single; secretion; analysis protein; single cells ... See more keywords
NAPT, an unbiased approach for sequential analysis of the protein N- and C-terminome.
Sign Up to like & getrecommendations! Published in 2022 at "Chemical communications"
DOI: 10.1039/d2cc03778e
Abstract: Protein termini are generally associated with protein stability. Taking advantage of charge state differences between terminal peptides and internal peptides, we developed a new method termed LysargiNase-assisted Analysis of the Protein N- and C-Terminome (NAPT)… read more here.
Keywords: terminome napt; protein terminome; analysis protein; protein termini ... See more keywords
Comprehensive analysis of protein acetyltransferases of human pathogen Mycobacterium tuberculosis
Sign Up to like & getrecommendations! Published in 2019 at "Bioscience Reports"
DOI: 10.1042/bsr20191661
Abstract: Abstract Tuberculosis (TB), a leading infectious disease caused by Mycobacterium tuberculosis strain, takes four human lives every minute globally. Paucity of knowledge on M. tuberculosis virulence and antibiotic resistance is the major challenge for tuberculosis… read more here.
Keywords: mycobacterium tuberculosis; comprehensive analysis; tuberculosis; analysis protein ... See more keywords
Comparative analysis of protein and differential responses of defense-related gene and enzyme activity reveals the long-term molecular responses of sugarcane inoculated with Sporisorium scitamineum
Sign Up to like & getrecommendations! Published in 2021 at "Journal of Plant Interactions"
DOI: 10.1080/17429145.2020.1867770
Abstract: Smut, the most important sugarcane fungal disease in China, is caused by Sporisorium scitamineum. Smut infection causes severe cane and sugar yield loss. Whole-plant resistance response is characte... read more here.
Keywords: sporisorium scitamineum; comparative analysis; protein differential; analysis protein ... See more keywords
CalFitter: a web server for analysis of protein thermal denaturation data
Sign Up to like & getrecommendations! Published in 2018 at "Nucleic Acids Research"
DOI: 10.1093/nar/gky358
Abstract: Abstract Despite significant advances in the understanding of protein structure-function relationships, revealing protein folding pathways still poses a challenge due to a limited number of relevant experimental tools. Widely-used experimental techniques, such as calorimetry or… read more here.
Keywords: analysis protein; analysis; web server; calfitter web ... See more keywords
In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases
Sign Up to like & getrecommendations! Published in 2017 at "PLoS ONE"
DOI: 10.1371/journal.pone.0183548
Abstract: Lactobacillus paracasei SD1 is a potential probiotic strain due to its ability to survive several conditions in human dental cavities. To ascertain its safety for human use, we therefore performed a comprehensive bioinformatics analysis and… read more here.
Keywords: protein; lactobacillus paracasei; silico analysis; paracasei sd1 ... See more keywords
SenseNet, a tool for analysis of protein structure networks obtained from molecular dynamics simulations
Sign Up to like & getrecommendations! Published in 2022 at "PLoS ONE"
DOI: 10.1371/journal.pone.0265194
Abstract: Computational methods play a key role for investigating allosteric mechanisms in proteins, with the potential of generating valuable insights for innovative drug design. Here we present the SenseNet (“Structure ENSEmble NETworks”) framework for analysis of… read more here.
Keywords: protein structure; analysis; structure networks; analysis protein ... See more keywords
Identification and functional analysis of protein secreted by Alternaria solani
Sign Up to like & getrecommendations! Published in 2023 at "PLOS ONE"
DOI: 10.1371/journal.pone.0281530
Abstract: Early blight, caused by the necrotrophic fungus Alternaria solani, is an important foliar disease that causes major yield losses of potato. Effector proteins secreted by pathogens to host cells can inhibit host immune response to… read more here.
Keywords: identification functional; protein secreted; analysis protein; alternaria solani ... See more keywords
Quantitative Analysis of Protein Evolution: The Phylogeny of Osteopontin
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2021.700789
Abstract: The phylogenetic analysis of proteins conventionally relies on the evaluation of amino acid sequences or coding sequences. Individual amino acids have measurable features that allow the translation from strings of letters (amino acids or bases)… read more here.
Keywords: analysis protein; analysis; protein evolution; quantitative analysis ... See more keywords
A Special Structural Based Weighted Network Approach for the Analysis of Protein Complexes
Sign Up to like & getrecommendations! Published in 2023 at "Applied Sciences"
DOI: 10.3390/app13116388
Abstract: The detection and analysis of protein complexes is essential for understanding the functional mechanism and cellular integrity. Recently, several techniques for detecting and analysing protein complexes from Protein–Protein Interaction (PPI) dataset have been developed. Most… read more here.
Keywords: protein complexes; based weighted; special structural; analysis protein ... See more keywords