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Published in 2022 at "Empirical Software Engineering"
DOI: 10.1007/s10664-021-10076-4
Abstract: Developers often use Static Code Analysis Tools (SCAT) to automatically detect different kinds of quality flaws in their source code. Since many warnings raised by SCATs may be irrelevant for a project/organization, it can be… read more here.
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Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac312
Abstract: Abstract RSAT (Regulatory Sequence Analysis Tools) enables the detection and the analysis of cis-regulatory elements in genomic sequences. This software suite performs (i) de novo motif discovery (including from genome-wide datasets like ChIP-seq/ATAC-seq) (ii) genomic… read more here.
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Published in 2022 at "IEEE Access"
DOI: 10.1109/access.2022.3169902
Abstract: Blockchain technology and its applications are gaining popularity day by day. It is a ground-breaking technology that allows users to communicate without the need of a trusted middleman. A smart contract (self-executable code) is deployed… read more here.
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Published in 2022 at "IEEE Transactions on Software Engineering"
DOI: 10.1109/tse.2021.3109563
Abstract: Numerous static taint analysis techniques have recently been proposed for identifying information flows in mobile applications. These techniques are often optimized and evaluated on a set of synthetic benchmarks, which makes the comparison results difficult… read more here.
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Published in 2020 at "Genome Biology"
DOI: 10.1186/s13059-020-1949-z
Abstract: Background Many functional analysis tools have been developed to extract functional and mechanistic insight from bulk transcriptome data. With the advent of single-cell RNA sequencing (scRNA-seq), it is in principle possible to do such an… read more here.
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Published in 2017 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2017.00174
Abstract: Pathway analysis is a powerful method for data analysis in genomics, most often applied to gene expression analysis. It is also promising for single-nucleotide polymorphism (SNP) data analysis, such as genome-wide association study data, because… read more here.
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Published in 2018 at "Frontiers in Neural Circuits"
DOI: 10.3389/fncir.2018.00085
Abstract: New reconstruction techniques are generating connectomes of unprecedented size. These must be analyzed to generate human comprehensible results. The analyses being used fall into three general categories. The first is interactive tools used during reconstruction,… read more here.
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Published in 2021 at "Crystals"
DOI: 10.3390/cryst11101246
Abstract: Intermolecular interactions have proved to play an important role in properties of SMMs such as quantum tunneling of magnetization (QTM), and they also reduce the rate of magnetic relaxation, as through the influence they have… read more here.