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   Articles with "annotation" as a keyword



Toward a large‐scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras

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recommendations! Published in 2019 at "Applications in Plant Sciences"

DOI: 10.1002/aps3.1233

Abstract: Premise of the Study Phenological annotation models computed on large‐scale herbarium data sets were developed and tested in this study. Methods Herbarium specimens represent a significant resource with which to study plant phenology. Nevertheless, phenological… read more here.

Keywords: large scale; herbarium specimens; temperate tropical; annotation ... See more keywords

The Computer‐Assisted Sequence Annotation (CASA) workflow for enzyme discovery

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recommendations! Published in 2025 at "Applications in Plant Sciences"

DOI: 10.1002/aps3.70009

Abstract: Abstract Premise With the advent of inexpensive nucleic acid sequencing and automated annotation at the level of basic functionality, the central problem of enzyme discovery is no longer finding active sequences, it is determining which… read more here.

Keywords: annotation; enzyme discovery; sequence; computer assisted ... See more keywords
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Virome assembly and annotation in brain tissue based on next‐generation sequencing

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recommendations! Published in 2020 at "Cancer Medicine"

DOI: 10.1002/cam4.3325

Abstract: The glioblastoma multiforme (GBM) is one of the deadliest tumors. It has been speculated that virus plays a role in GBM but the evidences are controversy. Published researches are mainly limited to studies on the… read more here.

Keywords: annotation; gbm; brain; virome assembly ... See more keywords

The Gray Area of Freezing of Gait Annotation: A Guideline and Open‐Source Practical Tool

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recommendations! Published in 2022 at "Movement Disorders Clinical Practice"

DOI: 10.1002/mdc3.13556

Abstract: Freezing of gait, a disabling episodic symptom, is difficult to assess as the exact begin‐ and endpoint of an episode is not easy to specify. This hampers scientific and clinical progress. The current golden standard… read more here.

Keywords: gait annotation; annotation guideline; gray area; annotation ... See more keywords

Tox21 Enricher: Web‐based Chemical/Biological Functional Annotation Analysis Tool Based on Tox21 Toxicity Screening Platform

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recommendations! Published in 2018 at "Molecular Informatics"

DOI: 10.1002/minf.201700129

Abstract: The US Toxicology Testing in the 21st Century (Tox21) program was established to develop more efficient and human‐relevant toxicity assessment methods. The Tox21 program screens >10,000 chemicals using quantitative high‐throughput screening (qHTS) of assays that… read more here.

Keywords: tox21; tox21 enricher; toxicity; annotation ... See more keywords

Assisted annotation in Deep LOGISMOS: Simultaneous multi-compartment 3D MRI segmentation of calf muscles.

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recommendations! Published in 2023 at "Medical physics"

DOI: 10.1002/mp.16284

Abstract: BACKGROUND Automated segmentation of individual calf muscle compartments in 3D MR images is gaining importance in diagnosing muscle disease, monitoring its progression, and prediction of the disease course. Although deep convolutional neural networks have ushered… read more here.

Keywords: assisted annotation; multi; calf; segmentation ... See more keywords

DomainMapper: Accurate domain structure annotation including those with non‐contiguous topologies

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recommendations! Published in 2022 at "Protein Science"

DOI: 10.1002/pro.4465

Abstract: Automated domain annotation is an important tool for structural informatics. These pipelines typically involve searching query sequences against hidden Markov model (HMM) profiles, yielding matches to profiles for various domains. However, domain annotation can be… read more here.

Keywords: domain structure; non contiguous; domain; annotation ... See more keywords

Highly precise community science annotations of video camera‐trapped fauna in challenging environments

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recommendations! Published in 2024 at "Remote Sensing in Ecology and Conservation"

DOI: 10.1002/rse2.402

Abstract: As camera trapping grows in popularity and application, some analytical limitations persist including processing time and accuracy of data annotation. Typically images are recorded by camera traps although videos are becoming increasingly collected even though… read more here.

Keywords: challenging environments; camera; annotation; community ... See more keywords

Annotation of Specialized Metabolites from High-Throughput and High-Resolution Mass Spectrometry Metabolomics.

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recommendations! Published in 2020 at "Methods in molecular biology"

DOI: 10.1007/978-1-0716-0239-3_12

Abstract: High-throughput mass spectrometry (MS) metabolomics profiling of highly complex samples allows the comprehensive detection of hundreds to thousands of metabolites under a given condition and point in time and produces information-rich data sets on known… read more here.

Keywords: spectrometry metabolomics; specialized metabolites; mass spectrometry; mass ... See more keywords
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Feature-Based Molecular Networking for Metabolite Annotation.

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recommendations! Published in 2020 at "Methods in molecular biology"

DOI: 10.1007/978-1-0716-0239-3_13

Abstract: The Global Natural Product Social Molecular Networking (GNPS) platform leverages tandem mass spectrometry (MS/MS) data for annotation of compounds. Molecular networks aid in the visualization of the chemical space within a metabolomics experiment. Recently, molecular… read more here.

Keywords: feature; annotation; based molecular; feature based ... See more keywords

Computational Methods for Pseudogene Annotation Based on Sequence Homology.

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recommendations! Published in 2021 at "Methods in molecular biology"

DOI: 10.1007/978-1-0716-1503-4_3

Abstract: The number of complete genome sequences explodes more and more with each passing year. Thus, methods for genome annotation need to be honed constantly to handle the deluge of information. Annotation of pseudogenes (i.e., gene… read more here.

Keywords: annotation; sequence homology; computational methods; pseudogene annotation ... See more keywords