De novo assembly and annotation of the CHOZN® GS−/− genome supports high‐throughput genome‐scale screening
Sign Up to like & getrecommendations! Published in 2022 at "Biotechnology and Bioengineering"
DOI: 10.1002/bit.28226
Abstract: Chinese hamster ovary (CHO) cells have been used as the industry standard for the production of therapeutic monoclonal antibodies for several decades. Despite significant improvements in commercial‐scale production processes and media, the CHO cell has… read more here.
Keywords: novo assembly; scale; assembly annotation; cho ... See more keywords
De novo assembly and annotation of the Avicennia officinalis L. transcriptome
Sign Up to like & getrecommendations! Published in 2017 at "Marine Genomics"
DOI: 10.1016/j.margen.2017.07.002
Abstract: Abstract Avicennia officinalis L. is a typical mangrove species, inhabiting inhospitable environments in the interface between sea and land. In this study, we generated RNA-seq data to de novo assemble the A. officinalis transcriptome. Starting… read more here.
Keywords: avicennia officinalis; novo assembly; assembly annotation; annotation avicennia ... See more keywords
Assembly and comparison of two closely related Brassica napus genomes
Sign Up to like & getrecommendations! Published in 2017 at "Plant Biotechnology Journal"
DOI: 10.1111/pbi.12742
Abstract: Summary As an increasing number of plant genome sequences become available, it is clear that gene content varies between individuals, and the challenge arises to predict the gene content of a species. However, genome comparison… read more here.
Keywords: closely related; brassica napus; assembly annotation; gene ... See more keywords
Abstract B38: Virome assembly and annotation in brain tissue based on next-generation sequencing
Sign Up to like & getrecommendations! Published in 2020 at "Cancer Research"
DOI: 10.1158/1538-7445.mvc2020-b38
Abstract: Glioblastoma multiforme (GBM) is one of the most lethal brain tumors, and the virosphere in brain and its correlation with GBM triggering is controversy. The previous research in brain virosphere was mainly limited to the… read more here.
Keywords: assembly annotation; virome; virome assembly; brain ... See more keywords
Assembly, annotation, and comparison of Macrophomina phaseolina isolates from strawberry and other hosts
Sign Up to like & getrecommendations! Published in 2019 at "BMC Genomics"
DOI: 10.1186/s12864-019-6168-1
Abstract: BackgroundMacrophomina phaseolina is a fungal plant pathogen with a broad host range, but one genotype was shown to exhibit host preference/specificity on strawberry. This pathogen lacked a high-quality genome assembly and annotation, and little was… read more here.
Keywords: phaseolina isolates; isolates strawberry; strawberry genotype; assembly annotation ... See more keywords
Ten steps to get started in Genome Assembly and Annotation
Sign Up to like & getrecommendations! Published in 2018 at "F1000Research"
DOI: 10.12688/f1000research.13598.1
Abstract: As a part of the ELIXIR-EXCELERATE efforts in capacity building, we present here 10 steps to facilitate researchers getting started in genome assembly and genome annotation. The guidelines given are broadly applicable, intended to be… read more here.
Keywords: genome assembly; started genome; annotation; assembly ... See more keywords
Draft Genome Assembly and Annotation of the Gila Topminnow Poeciliopsis occidentalis
Sign Up to like & getrecommendations! Published in 2019 at "Frontiers in Ecology and Evolution"
DOI: 10.3389/fevo.2019.00404
Abstract: HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research documents, whether they are published or not. The documents may come from teaching and research institutions in France or abroad,… read more here.
Keywords: topminnow poeciliopsis; genome assembly; annotation gila; assembly annotation ... See more keywords
Hybrid Assembly and Annotation of the Genome of the Indian Punica granatum, a Superfood
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2022.786825
Abstract: The wonder fruit pomegranate (Punica granatum, family Lythraceae) is one of India’s economically important fruit crops that can grow in different agro-climatic conditions ranging from tropical to temperate regions. This study reports high-quality de novo… read more here.
Keywords: hybrid assembly; annotation genome; assembly annotation; genome ... See more keywords
Plastaumatic: Automating plastome assembly and annotation
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2022.1011948
Abstract: Plastome sequence data is most often extracted from plant whole genome sequencing data and need to be assembled and annotated separately from the nuclear genome sequence. In projects comprising multiple genomes, it is labour intense… read more here.
Keywords: plastaumatic automating; plastome assembly; assembly annotation; annotation ... See more keywords
De Novo Assembly and Annotation of 11 Diverse Shrub Willow (Salix) Genomes Reveals Novel Gene Organization in Sex-Linked Regions
Sign Up to like & getrecommendations! Published in 2023 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms24032904
Abstract: Poplar and willow species in the Salicaceae are dioecious, yet have been shown to use different sex determination systems located on different chromosomes. Willows in the subgenus Vetrix are interesting for comparative studies of sex… read more here.
Keywords: novo assembly; shrub willow; sex determination; assembly annotation ... See more keywords