De novo assembly and annotation of the CHOZN® GS−/− genome supports high‐throughput genome‐scale screening
Sign Up to like & getrecommendations! Published in 2022 at "Biotechnology and Bioengineering"
DOI: 10.1002/bit.28226
Abstract: Chinese hamster ovary (CHO) cells have been used as the industry standard for the production of therapeutic monoclonal antibodies for several decades. Despite significant improvements in commercial‐scale production processes and media, the CHO cell has… read more here.
Keywords: novo assembly; scale; assembly annotation; cho ... See more keywords
De novo assembly and annotation of the Avicennia officinalis L. transcriptome
Sign Up to like & getrecommendations! Published in 2017 at "Marine Genomics"
DOI: 10.1016/j.margen.2017.07.002
Abstract: Abstract Avicennia officinalis L. is a typical mangrove species, inhabiting inhospitable environments in the interface between sea and land. In this study, we generated RNA-seq data to de novo assemble the A. officinalis transcriptome. Starting… read more here.
Keywords: avicennia officinalis; novo assembly; assembly annotation; annotation avicennia ... See more keywords
Chromosome-level genome assembly and annotation of the Patagonian toothfish Dissostichus eleginoides
Sign Up to like & getrecommendations! Published in 2024 at "Scientific Data"
DOI: 10.1038/s41597-024-04119-w
Abstract: The Patagonian toothfish (Dissostichus eleginoides) belongs to the Actinopterygii class, and the suborder Notothenioidei, which lives in cold waters in the Southern Hemisphere. We performed assembly and annotation, and we integrated the Illumina short-read sequencing… read more here.
Keywords: level; patagonian toothfish; chromosome level; dissostichus eleginoides ... See more keywords
Chloroplast Genome of Myristica fragrans: Assembly, Annotation, and Phylogenetic Relationships
Sign Up to like & getrecommendations! Published in 2025 at "Forest Science and Technology"
DOI: 10.1080/21580103.2025.2482080
Abstract: Abstract Myristica fragrans is a native and economically significant species in Indonesia. However, its complete chloroplast genome, particularly from Indonesia, has not been previously reported. In this study, we successfully sequenced and assembled the complete… read more here.
Keywords: myristica fragrans; fragrans assembly; chloroplast genome; assembly annotation ... See more keywords
Chromosome-Level Genome Assembly and Annotation of a Periodical Cicada Species: Magicicada septendecula
Sign Up to like & getrecommendations! Published in 2024 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evae001
Abstract: Abstract We present a high-quality assembly and annotation of the periodical cicada species, Magicicada septendecula (Hemiptera: Auchenorrhyncha: Cicadidae). Periodical cicadas have a significant ecological impact, serving as a food source for many mammals, reptiles, and… read more here.
Keywords: assembly annotation; periodical cicada; genome;
De Novo Long-Read Genome Assembly and Annotation of the Luna Moth (Actias luna) Fully Resolves Repeat-Rich Silk Genes
Sign Up to like & getrecommendations! Published in 2024 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evae148
Abstract: Abstract We present the first long-read de novo assembly and annotation of the luna moth (Actias luna) and provide the full characterization of heavy chain fibroin (h-fibroin), a long and highly repetitive gene (>20 kb)… read more here.
Keywords: annotation luna; luna moth; long read; annotation ... See more keywords
A Complete Assembly and Annotation of the American Shad Genome Yields Insights into the Origins of Diadromy
Sign Up to like & getrecommendations! Published in 2024 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evae276
Abstract: Abstract Transitions across ecological boundaries, such as those separating freshwater from the sea, are major drivers of phenotypic innovation and biodiversity. Despite their importance to evolutionary history, we know little about the mechanisms by which… read more here.
Keywords: american shad; shad genome; history; complete assembly ... See more keywords
Assembly and Annotation of the Tetraploid Salsola tragus (Russian Thistle) Genome
Sign Up to like & getrecommendations! Published in 2025 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evaf014
Abstract: Abstract This report presents two phased chromosome-scale genome assemblies of allotetraploid Salsola tragus (2n = 4x = 36) and fills the current genomics resource gap for this species. Flow cytometry estimated 1C genome size was… read more here.
Keywords: salsola tragus; genome; tragus; annotation ... See more keywords
Assembly and comparison of two closely related Brassica napus genomes
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DOI: 10.1111/pbi.12742
Abstract: Summary As an increasing number of plant genome sequences become available, it is clear that gene content varies between individuals, and the challenge arises to predict the gene content of a species. However, genome comparison… read more here.
Keywords: closely related; brassica napus; assembly annotation; gene ... See more keywords
Abstract B38: Virome assembly and annotation in brain tissue based on next-generation sequencing
Sign Up to like & getrecommendations! Published in 2020 at "Cancer Research"
DOI: 10.1158/1538-7445.mvc2020-b38
Abstract: Glioblastoma multiforme (GBM) is one of the most lethal brain tumors, and the virosphere in brain and its correlation with GBM triggering is controversy. The previous research in brain virosphere was mainly limited to the… read more here.
Keywords: assembly annotation; virome; virome assembly; brain ... See more keywords
Assembly, annotation, and comparison of Macrophomina phaseolina isolates from strawberry and other hosts
Sign Up to like & getrecommendations! Published in 2019 at "BMC Genomics"
DOI: 10.1186/s12864-019-6168-1
Abstract: BackgroundMacrophomina phaseolina is a fungal plant pathogen with a broad host range, but one genotype was shown to exhibit host preference/specificity on strawberry. This pathogen lacked a high-quality genome assembly and annotation, and little was… read more here.
Keywords: phaseolina isolates; isolates strawberry; strawberry genotype; assembly annotation ... See more keywords