Bali-Phy version 3: model-based co-estimation of alignment and phylogeny
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DOI: 10.1093/bioinformatics/btab129
Abstract: SUMMARY We describe improvements to BAli-Phy, a Markov chain Monte Carlo (MCMC) program that jointly estimates phylogeny, alignment, and other parameters from unaligned sequence data. Version 3 is substantially faster for large trees, and implements… read more here.
Keywords: phy version; bali phy; phy; alignment ... See more keywords
Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy.
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DOI: 10.1093/bioinformatics/btab555
Abstract: MOTIVATION BAli-Phy, a popular Bayesian method that co-estimates multiple sequence alignments and phylogenetic trees, is a rigorous statistical method, but due to its computational requirements, it has generally been limited to relatively small datasets (at… read more here.
Keywords: aware alignment; bali phy; phy; method ... See more keywords