Three-dimensional sector-wise golden angle-improved k-space uniformity after electrocardiogram binning.
Sign Up to like & getrecommendations! Published in 2023 at "Magnetic resonance in medicine"
DOI: 10.1002/mrm.29698
Abstract: PURPOSE To develop and evaluate a 3D sector-wise golden-angle (3D-SWIG) profile ordering scheme for cardiovascular MR cine imaging that maintains high k-space uniformity after electrocardiogram (ECG) binning. METHOD Cardiovascular MR (CMR) was performed at 1.5 T.… read more here.
Keywords: space uniformity; golden angle; space; uniformity ... See more keywords
Serpentine: a flexible 2D binning method for differential Hi-C analysis
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa249
Abstract: Abstract Motivation Hi-C contact maps reflect the relative contact frequencies between pairs of genomic loci, quantified through deep sequencing. Differential analyses of these maps enable downstream biological interpretations. However, the multi-fractal nature of the chromatin… read more here.
Keywords: flexible binning; binning method; serpentine flexible; binning ... See more keywords
MetaBMF: a scalable binning algorithm for large-scale reference-free metagenomic studies
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz577
Abstract: MOTIVATION Metagenomics studies microbial genomes in an ecosystem such as the gastrointestinal tract of a human. Identification of novel microbial species and quantification of their distributional variations among different samples that are sequenced using next-generation-sequencing… read more here.
Keywords: metabmf scalable; different samples; matrix; binning ... See more keywords
BusyBee Web: towards comprehensive and differential composition-based metagenomic binning
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac298
Abstract: Abstract Despite recent methodology and reference database improvements for taxonomic profiling tools, metagenomic assembly and genomic binning remain important pillars of metagenomic analysis workflows. In case reference information is lacking, genomic binning is considered to… read more here.
Keywords: busybee web; composition based; analysis; binning ... See more keywords