Bioinformatic Tools and Guidelines for the Design of Fluorescence In Situ Hybridization Probes.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1115-9_3
Abstract: Fluorescence in situ hybridization (FISH) is a well-established technique that allows the detection of microorganisms in diverse types of samples (e.g., clinical, food, environmental samples, and biofilm communities). The FISH probe design is an essential… read more here.
Keywords: fluorescence situ; bioinformatic tools; situ hybridization; guidelines design ... See more keywords
In Silico Analysis of nsSNPs of Human KRAS Gene and Protein Modeling Using Bioinformatic Tools
Sign Up to like & getrecommendations! Published in 2023 at "ACS Omega"
DOI: 10.1021/acsomega.3c00804
Abstract: The KRAS gene belongs to the RAS family and codes for 188 amino acid residues of KRAS protein, with a molecular mass of 21.6 kD. Non-synonymous single-nucleotide polymorphisms (nsSNPs) have been identified within the coding… read more here.
Keywords: analysis nssnps; bioinformatic tools; kras gene; silico analysis ... See more keywords
Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of Norovirus
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DOI: 10.1128/aem.01522-22
Abstract: In benchmarking bioinformatic pipelines for analyzing high-throughput sequencing (HTS) data sets, we provide method standardization for bioinformatics broadly and specifically for norovirus in situations for which no officially endorsed methods exist at present. This study… read more here.
Keywords: tools amplicon; classification; database; benchmarking bioinformatic ... See more keywords
Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data
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DOI: 10.1186/s12859-017-2006-0
Abstract: BackgroundBioinformatic tools for the enrichment of ‘omics’ datasets facilitate interpretation and understanding of data. To date few are suitable for metabolomics datasets. The main objective of this work is to give a critical overview, for… read more here.
Keywords: tools enrichment; bioinformatic tools; enrichment analysis; analysis ... See more keywords
Bioinformatic Tools for NGS-Based Metagenomics to Improve the Clinical Diagnosis of Emerging, Re-Emerging and New Viruses
Sign Up to like & getrecommendations! Published in 2023 at "Viruses"
DOI: 10.3390/v15020587
Abstract: Epidemics and pandemics have occurred since the beginning of time, resulting in millions of deaths. Many such disease outbreaks are caused by viruses. Some viruses, particularly RNA viruses, are characterized by their high genetic variability,… read more here.
Keywords: tools ngs; bioinformatic tools; viruses bioinformatic; ngs based ... See more keywords