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   Articles with "bioinformatics pipelines" as a keyword



Formal Medical Knowledge Representation Supports Deep Learning Algorithms, Bioinformatics Pipelines, Genomics Data Analysis, and Big Data Processes

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recommendations! Published in 2019 at "Yearbook of Medical Informatics"

DOI: 10.1055/s-0039-1677933

Abstract: Summary Objective : To select, present, and summarize the best papers published in 2018 in the field of Knowledge Representation and Management (KRM). Methods : A comprehensive and standardized review of the medical informatics literature… read more here.

Keywords: big data; bioinformatics pipelines; ontology; knowledge ... See more keywords

A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction.

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recommendations! Published in 2024 at "Briefings in functional genomics"

DOI: 10.1093/bfgp/elae009

Abstract: Genomic data analysis has witnessed a surge in complexity and volume, primarily driven by the advent of high-throughput technologies. In particular, studying chromatin loops and structures has become pivotal in understanding gene regulation and genome… read more here.

Keywords: deep learning; genomic data; learning models; systematic analyses ... See more keywords

Improving the reliability, quality, and maintainability of bioinformatics pipelines with nf-test

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recommendations! Published in 2025 at "GigaScience"

DOI: 10.1093/gigascience/giaf130

Abstract: Abstract Background The workflow management system Nextflow, together with the nf-core community, has established an essential ecosystem in bioinformatics. However, ensuring the correctness and reliability of large and complex Nextflow pipelines remains challenging due to… read more here.

Keywords: quality; reliability; test; maintainability ... See more keywords

Comparison of Bioinformatics Pipelines and Operating Systems for the Analyses of 16S rRNA Gene Amplicon Sequences in Human Fecal Samples

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recommendations! Published in 2020 at "Frontiers in Microbiology"

DOI: 10.3389/fmicb.2020.01262

Abstract: Amplicon high-throughput sequencing of 16S ribosomal RNA (rRNA) gene is currently the most widely used technique to investigate complex gut microbial communities. Microbial identification might be influenced by several factors, including the choice of bioinformatic… read more here.

Keywords: qiime2 bioconductor; bioinformatics pipelines; comparison bioinformatics; operating systems ... See more keywords