Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications
Sign Up to like & getrecommendations! Published in 2018 at "European Journal of Plant Pathology"
DOI: 10.1007/s10658-018-1544-2
Abstract: As conventional or chemical pesticides have negative impact on environment and health of both farmer and consumers, it becomes relevant to develop alternative solutions to limit their use. In this context, innovative strategies to accelerate… read more here.
Keywords: new lipopeptides; bioinformatics tools; tools discovery; biocontrol applications ... See more keywords
Capabilities of bioinformatics tools for optimizing physicochemical features of proteins used in Nano biosensors: A short overview of the tools related to bioinformatics
Sign Up to like & getrecommendations! Published in 2021 at "Biochemistry and Biophysics Reports"
DOI: 10.1016/j.bbrep.2021.101094
Abstract: Protein-protein ligand is one of the most detection methods used in Nano biosensors. Based on the advantage of specific docking between two special 3D structures, they have become a potent candidate in bioanalysis and Nanodiagnostic… read more here.
Keywords: protein; bioinformatics tools; features proteins; used nano ... See more keywords
The bioinformatics toolbox for circRNA discovery and analysis
Sign Up to like & getrecommendations! Published in 2021 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbaa001
Abstract: Abstract Circular RNAs (circRNAs) are a unique class of RNA molecule identified more than 40 years ago which are produced by a covalent linkage via back-splicing of linear RNA. Recent advances in sequencing technologies and… read more here.
Keywords: bioinformatics tools; discovery analysis; analysis; toolbox circrna ... See more keywords
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies
Sign Up to like & getrecommendations! Published in 2021 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbaa362
Abstract: Abstract SARS-CoV-2 is the causative agent of COVID-19, the ongoing global pandemic. It has posed a worldwide challenge to human health as no effective treatment is currently available to combat the disease. Its severity has… read more here.
Keywords: bioinformatics tools; tools resources; host; structure ... See more keywords
A comprehensive review of bioinformatics tools for chromatin loop calling
Sign Up to like & getrecommendations! Published in 2023 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbad072
Abstract: Precisely calling chromatin loops has profound implications for further analysis of gene regulation and disease mechanisms. Technological advances in chromatin conformation capture (3C) assays make it possible to identify chromatin loops in the genome. However,… read more here.
Keywords: comprehensive review; loop; loop calling; bioinformatics tools ... See more keywords
Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites
Sign Up to like & getrecommendations! Published in 2018 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbx020
Abstract: Specialized metabolites (also called natural products or secondary metabolites) derived from bacteria, fungi, marine organisms and plants constitute an important source of antibiotics, anti-cancer agents, insecticides, immunosuppressants and herbicides. Many specialized metabolites in bacteria and… read more here.
Keywords: bioinformatics tools; specialized metabolites; metabolic pathways; gene clusters ... See more keywords
Developing standards for the microbiome field
Sign Up to like & getrecommendations! Published in 2020 at "Microbiome"
DOI: 10.1186/s40168-020-00856-3
Abstract: Background Effective standardisation of methodologies to analyse the microbiome is essential to the entire microbiome community. Despite the microbiome field being established for over a decade, there are no accredited or certified reference materials available… read more here.
Keywords: reference reagents; bioinformatics tools; community; reference ... See more keywords
Specific Bioactive Factors and Application of Bioinformatics Tools for the Successful Use of Secretome and Extracellular Vesicles as Cell Free Therapeutics.
Sign Up to like & getrecommendations! Published in 2021 at "Current molecular medicine"
DOI: 10.2174/1566524021666210910113327
Abstract: read more here.
Keywords: bioinformatics tools; tools successful; factors application; specific bioactive ... See more keywords
Comprehensive Review of Web Servers and Bioinformatics Tools for Cancer Prognosis Analysis
Sign Up to like & getrecommendations! Published in 2020 at "Frontiers in Oncology"
DOI: 10.3389/fonc.2020.00068
Abstract: Prognostic biomarkers are of great significance to predict the outcome of patients with cancer, to guide the clinical treatments, to elucidate tumorigenesis mechanisms, and offer the opportunity of identifying therapeutic targets. To screen and develop… read more here.
Keywords: bioinformatics tools; tools web; prognostic biomarkers; review ... See more keywords
Current Bioinformatics Tools to Optimize CRISPR/Cas9 Experiments to Reduce Off-Target Effects
Sign Up to like & getrecommendations! Published in 2023 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms24076261
Abstract: The CRISPR-Cas system has evolved into a cutting-edge technology that has transformed the field of biological sciences through precise genetic manipulation. CRISPR/Cas9 nuclease is evolving into a revolutionizing method to edit any gene of any… read more here.
Keywords: crispr cas9; target effects; cas9 experiments; bioinformatics tools ... See more keywords
A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics
Sign Up to like & getrecommendations! Published in 2022 at "Metabolites"
DOI: 10.3390/metabo12070584
Abstract: Mass spectrometry is a widely used technology to identify and quantify biomolecules such as lipids, metabolites and proteins necessary for biomedical research. In this study, we catalogued freely available software tools, libraries, databases, repositories and… read more here.
Keywords: mass spectrometry; current encyclopedia; encyclopedia bioinformatics; data formats ... See more keywords