Cross-lingual semantic annotation of biomedical literature: experiments in Spanish and English
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz853
Abstract: MOTIVATION Biomedical literature is one of the most relevant sources of information for knowledge mining in the field of Bioinformatics. In spite of English being the most widely addressed language in the field, in recent… read more here.
Keywords: spanish english; biomedical literature; annotation; semantic annotation ... See more keywords
Automated extraction of genes associated with antibiotic resistance from the biomedical literature.
Sign Up to like & getrecommendations! Published in 2022 at "Database : the journal of biological databases and curation"
DOI: 10.1093/database/baab077
Abstract: The detection of bacterial antibiotic resistance phenotypes is important when carrying out clinical decisions for patient treatment. Conventional phenotypic testing involves culturing bacteria which requires a significant amount of time and work. Whole-genome sequencing is… read more here.
Keywords: extraction; biomedical literature; genes associated; resistance ... See more keywords
Placebo's invisible brother: a restricted scoping review of biomedical literature on the nocebo effect.
Sign Up to like & getrecommendations! Published in 2022 at "Pain"
DOI: 10.1097/j.pain.0000000000002629
Abstract: Placebos and their beneficial clinical and psychological effects are well-researched, but nocebo effects receive far less attention, despite being highly undesirable. The aim of this restricted scoping review was to examine how nocebo effects are… read more here.
Keywords: biomedical literature; restricted scoping; systematic reviews; placebo ... See more keywords
LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation
Sign Up to like & getrecommendations! Published in 2022 at "IEEE/ACM Transactions on Computational Biology and Bioinformatics"
DOI: 10.1109/tcbb.2022.3173562
Abstract: The rapid growth of biomedical literature poses a significant challenge for curation and interpretation. This has become more evident during the COVID-19 pandemic. LitCovid, a literature database of COVID-19 related papers in PubMed, has accumulated… read more here.
Keywords: biomedical literature; curation; litmc bert; literature ... See more keywords
Is it time to start using the emoji in biomedical literature?
Sign Up to like & getrecommendations! Published in 2018 at "British Medical Journal"
DOI: 10.1136/bmj.k5033
Abstract: As the emoji continues to gain in popularity, Vikas O’Reilly-Shah and colleagues explore its potential role in scientific communication read more here.
Keywords: biomedical literature; time start; emoji biomedical; using emoji ... See more keywords
Abstract 3574: A survey of mutations in biomedical literature using a machine based approach
Sign Up to like & getrecommendations! Published in 2017 at "Cancer Research"
DOI: 10.1158/1538-7445.am2017-3574
Abstract: Introduction: Being able to characterize mutations for both pathogenicity and drug response is indispensable to the analysis of tumor genomics and the development of therapeutic options. While a great deal of data has been deposited… read more here.
Keywords: literature; biomedical literature; machine based; approach ... See more keywords
Discovering themes in biomedical literature using a projection-based algorithm
Sign Up to like & getrecommendations! Published in 2018 at "BMC Bioinformatics"
DOI: 10.1186/s12859-018-2240-0
Abstract: BackgroundThe need to organize any large document collection in a manner that facilitates human comprehension has become crucial with the increasing volume of information available. Two common approaches to provide a broad overview of the… read more here.
Keywords: biomedical literature; discovering themes; themes biomedical; document ... See more keywords
Predicting protein functions by applying predicate logic to biomedical literature
Sign Up to like & getrecommendations! Published in 2019 at "BMC Bioinformatics"
DOI: 10.1186/s12859-019-2594-y
Abstract: BackgroundA large number of computational methods have been proposed for predicting protein functions. The underlying techniques adopted by most of these methods revolve around predicting the functions of an unannotated protein p from already annotated… read more here.
Keywords: biomedical texts; ppf; explicitly mentioned; biomedical literature ... See more keywords
A2A: a platform for research in biomedical literature search
Sign Up to like & getrecommendations! Published in 2020 at "BMC Bioinformatics"
DOI: 10.1186/s12859-020-03894-8
Abstract: Background Finding relevant literature is crucial for many biomedical research activities and in the practice of evidence-based medicine. Search engines such as PubMed provide a means to search and retrieve published literature, given a query.… read more here.
Keywords: medicine; literature; research; search ... See more keywords
Efficacy improvement in searching MEDLINE database using a novel PubMed visual analytic system: EEEvis
Sign Up to like & getrecommendations! Published in 2023 at "PLOS ONE"
DOI: 10.1371/journal.pone.0281422
Abstract: PubMed is the most extensively used database and search engine in the biomedical and healthcare fields. However, users could experience several difficulties in acquiring their target papers facing massive numbers of search results, especially in… read more here.
Keywords: biomedical literature; analytic system; visual analytic; search ... See more keywords
A Deep Learning Method to Automatically Identify Reports of Scientifically Rigorous Clinical Research from the Biomedical Literature: Comparative Analytic Study
Sign Up to like & getrecommendations! Published in 2018 at "Journal of Medical Internet Research"
DOI: 10.2196/10281
Abstract: Background A major barrier to the practice of evidence-based medicine is efficiently finding scientifically sound studies on a given clinical topic. Objective To investigate a deep learning approach to retrieve scientifically sound treatment studies from… read more here.
Keywords: research; search; learning; biomedical literature ... See more keywords