AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btad310
Abstract: MOTIVATION Biomedical named entity recognition (BioNER) seeks to automatically recognize biomedical entities in natural language text, serving as a necessary foundation for downstream text mining tasks and applications such as information extraction and question answering.… read more here.
Keywords: bioner; entity recognition; entity; deep learning ... See more keywords
D3NER: biomedical named entity recognition using CRF‐biLSTM improved with fine‐tuned embeddings of various linguistic information
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DOI: 10.1093/bioinformatics/bty356
Abstract: Motivation: Recognition of biomedical named entities in the textual literature is a highly challenging research topic with great interest, playing as the prerequisite for extracting huge amount of high‐valued biomedical knowledge deposited in unstructured text… read more here.
Keywords: information; biomedical named; recognition; d3ner ... See more keywords
TaughtNet: Learning Multi-Task Biomedical Named Entity Recognition From Single-Task Teachers
Sign Up to like & getrecommendations! Published in 2023 at "IEEE Journal of Biomedical and Health Informatics"
DOI: 10.1109/jbhi.2023.3244044
Abstract: In Biomedical Named Entity Recognition (BioNER), the use of current cutting-edge deep learning-based methods, such as deep bidirectional transformers (e.g. BERT, GPT-3), can be substantially hampered by the absence of publicly accessible annotated datasets. When… read more here.
Keywords: recognition; entity; task; multi task ... See more keywords
Knowledge Adaptive Multi-way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension.
Sign Up to like & getrecommendations! Published in 2023 at "IEEE/ACM transactions on computational biology and bioinformatics"
DOI: 10.1109/tcbb.2022.3233856
Abstract: Rapid and effective utilization of biomedical literature is paramount to combat diseases like COVID19. Biomedical named entity recognition (BioNER) is a fundamental task in text mining that can help physicians accelerate knowledge discovery to curb… read more here.
Keywords: domain knowledge; knowledge; named entity; biomedical named ... See more keywords
Transferring from Textual Entailment to Biomedical Named Entity Recognition.
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DOI: 10.1109/tcbb.2023.3236477
Abstract: Biomedical Named Entity Recognition (BioNER) aims at identifying biomedical entities such as genes, proteins, diseases, and chemical compounds in the given textual data. However, due to the issues of ethics, privacy, and high specialization of… read more here.
Keywords: bioner; entity recognition; textual entailment; named entity ... See more keywords
On the Use of Knowledge Transfer Techniques for Biomedical Named Entity Recognition
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DOI: 10.3390/fi15020079
Abstract: Biomedical named entity recognition (BioNER) is a preliminary task for many other tasks, e.g., relation extraction and semantic search. Extracting the text of interest from biomedical documents becomes more demanding as the availability of online… read more here.
Keywords: entity recognition; task; deep learning; named entity ... See more keywords