Formal axioms in biomedical ontologies improve analysis and interpretation of associated data
Sign Up to like & getrecommendations! Published in 2019 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz920
Abstract: Abstract Motivation Over the past years, significant resources have been invested into formalizing biomedical ontologies. Formal axioms in ontologies have been developed and used to detect and ensure ontology consistency, find unsatisfiable classes, improve interoperability,… read more here.
Keywords: formal axioms; ontology; knowledge; analysis ... See more keywords
Expressing Biomedical Ontologies in Natural Language for Expert Evaluation
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DOI: 10.3233/978-1-61499-830-3-838
Abstract: We report on a study of our custom Hootation software for the purposes of assessing its ability to produce clear and accurate natural language phrases from axioms embedded in three biomedical ontologies. Using multiple domain… read more here.
Keywords: ontology; natural language; biomedical ontologies; expressing biomedical ... See more keywords
Matching Biomedical Ontologies via a Hybrid Graph Attention Network
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DOI: 10.3389/fgene.2022.893409
Abstract: Biomedical ontologies have been used extensively to formally define and organize biomedical terminologies, and these ontologies are typically manually created by biomedical experts. With more biomedical ontologies being built independently, matching them to address the… read more here.
Keywords: graph attention; biomedical ontologies; attention network; ontology ... See more keywords