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   Articles with "biomedical ontologies" as a keyword



Formal axioms in biomedical ontologies improve analysis and interpretation of associated data

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recommendations! Published in 2019 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btz920

Abstract: Abstract Motivation Over the past years, significant resources have been invested into formalizing biomedical ontologies. Formal axioms in ontologies have been developed and used to detect and ensure ontology consistency, find unsatisfiable classes, improve interoperability,… read more here.

Keywords: formal axioms; ontology; knowledge; analysis ... See more keywords
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Expressing Biomedical Ontologies in Natural Language for Expert Evaluation

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recommendations! Published in 2017 at "Studies in health technology and informatics"

DOI: 10.3233/978-1-61499-830-3-838

Abstract: We report on a study of our custom Hootation software for the purposes of assessing its ability to produce clear and accurate natural language phrases from axioms embedded in three biomedical ontologies. Using multiple domain… read more here.

Keywords: ontology; natural language; biomedical ontologies; expressing biomedical ... See more keywords

Merging Biomedical Ontologies with BioSTransformers

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recommendations! Published in 2024 at "Studies in health technology and informatics"

DOI: 10.3233/shti240526

Abstract: Ontologies play a key role in representing and structuring domain knowledge. In the biomedical domain, the need for this type of representation is crucial for structuring, coding, and retrieving data. However, available ontologies do not… read more here.

Keywords: ontology; merging biomedical; ontologies biostransformers; biomedical ontologies ... See more keywords

Matching Biomedical Ontologies via a Hybrid Graph Attention Network

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recommendations! Published in 2022 at "Frontiers in Genetics"

DOI: 10.3389/fgene.2022.893409

Abstract: Biomedical ontologies have been used extensively to formally define and organize biomedical terminologies, and these ontologies are typically manually created by biomedical experts. With more biomedical ontologies being built independently, matching them to address the… read more here.

Keywords: graph attention; biomedical ontologies; attention network; ontology ... See more keywords