Modeling and Analysis of Stochastic Reaction Kinetics in Biomolecular Systems
Sign Up to like & getrecommendations! Published in 2020 at "New Generation Computing"
DOI: 10.1007/s00354-020-00095-y
Abstract: Chemical reactions in small-volume reactors such as biological cells are highly variable due to the stochastic collision events of the small number of molecules. To analyze and design these stochastic biomolecular reactions, computational tools have… read more here.
Keywords: modeling analysis; reaction kinetics; biomolecular systems; analysis stochastic ... See more keywords
Nonparametric Analysis of Nonlinear Distortions for Biomolecular Systems
Sign Up to like & getrecommendations! Published in 2018 at "IFAC-PapersOnLine"
DOI: 10.1016/j.ifacol.2018.05.035
Abstract: Abstract System identification of biomolecular circuits is a challenging problem, including due to the nonlinearities that are often present in them. The extent to which these nonlinearities contribute to the overall behaviour of the biomolecular… read more here.
Keywords: distortions biomolecular; system; nonlinear distortions; analysis nonlinear ... See more keywords
The linear framework: using graph theory to reveal the algebra and thermodynamics of biomolecular systems
Sign Up to like & getrecommendations! Published in 2022 at "Interface Focus"
DOI: 10.1098/rsfs.2022.0013
Abstract: The linear framework uses finite, directed graphs with labelled edges to model biomolecular systems. Graph vertices represent biochemical species or molecular states, edges represent reactions or transitions and labels represent rates. The graph yields a… read more here.
Keywords: linear framework; graph theory; biomolecular systems; thermodynamics ... See more keywords