Boolean network modeling in systems pharmacology
Sign Up to like & getrecommendations! Published in 2017 at "Journal of Pharmacokinetics and Pharmacodynamics"
DOI: 10.1007/s10928-017-9567-4
Abstract: Quantitative systems pharmacology (QSP) is an emerging discipline that aims to discover how drugs modulate the dynamics of biological components in molecular and cellular networks and the impact of those perturbations on human pathophysiology. The… read more here.
Keywords: network modeling; network; network models; boolean network ... See more keywords
Synchronization of asynchronous probabilistic boolean network
Sign Up to like & getrecommendations! Published in 2018 at "Chinese Journal of Physics"
DOI: 10.1016/j.cjph.2018.09.007
Abstract: Abstract This paper researches the synchronization of asynchronous probabilistic Boolean network and synchronization theorems are provided. Inner synchronization and outer synchronization are considered, respectively. It should be pointed that synchronization theorems and corollaries with probability… read more here.
Keywords: network; asynchronous probabilistic; boolean network; synchronization ... See more keywords
Automated Inference of Gene Regulatory Networks Using Explicit Regulatory Modules.
Sign Up to like & getrecommendations! Published in 2019 at "Journal of theoretical biology"
DOI: 10.1016/j.jtbi.2019.110091
Abstract: Gene regulatory networks are a popular tool for modelling important biological phenomena, such as cell differentiation or oncogenesis. Efficient identification of the causal connections between genes, their products and regulating transcription factors, is key to… read more here.
Keywords: network; gene regulatory; boolean network; model ... See more keywords
Physical generation of random numbers using an asymmetrical Boolean network
Sign Up to like & getrecommendations! Published in 2021 at "Chinese Physics B"
DOI: 10.1088/1674-1056/abf4fc
Abstract: Autonomous Boolean networks (ABNs) have been successfully applied to the generation of random number due to their complex nonlinear dynamics and convenient on-chip integration. Most of the ABNs used for random number generators show a… read more here.
Keywords: random numbers; boolean; generation random; boolean network ... See more keywords
Boolean network sketches: a unifying framework for logical model inference
Sign Up to like & getrecommendations! Published in 2023 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btad158
Abstract: Abstract Motivation The problem of model inference is of fundamental importance to systems biology. Logical models (e.g. Boolean networks; BNs) represent a computationally attractive approach capable of handling large biological networks. The models are typically… read more here.
Keywords: boolean network; experimental data; model; model inference ... See more keywords
ATEN: And/Or tree ensemble for inferring accurate Boolean network topology and dynamics
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btz563
Abstract: MOTIVATION Inferring gene regulatory networks from gene expression time series data is important for gaining insights into the complex processes of cell life. A popular approach is to infer Boolean networks. However, it is still… read more here.
Keywords: boolean network; topology; network topology; gene ... See more keywords
Stability of Boolean Networks With Delays Using Pinning Control
Sign Up to like & getrecommendations! Published in 2018 at "IEEE Transactions on Control of Network Systems"
DOI: 10.1109/tcns.2016.2585861
Abstract: This paper investigates pinning control for stabilizing Boolean networks with time delays. The purpose of this paper is to design a control algorithm to select a fraction of key nodes for a Boolean network with… read more here.
Keywords: control; boolean network; pinning control; boolean networks ... See more keywords
The Unpredictability Analysis of Boolean Chaos
Sign Up to like & getrecommendations! Published in 2020 at "IEEE Transactions on Circuits and Systems II: Express Briefs"
DOI: 10.1109/tcsii.2019.2949571
Abstract: To analyze the unpredictability of Boolean chaos, the model for chaotic circuit system based on autonomous Boolean network is established. In addition, the equations of the Boolean network with propagation time jitter are deduced. By… read more here.
Keywords: time; chaos; boolean chaos; boolean network ... See more keywords