Scalable Genome Assembly through Parallel de Bruijn Graph Construction for Multiple k-mers
Sign Up to like & getrecommendations! Published in 2019 at "Scientific Reports"
DOI: 10.1038/s41598-019-51284-9
Abstract: Remarkable advancements in high-throughput gene sequencing technologies have led to an exponential growth in the number of sequenced genomes. However, unavailability of highly parallel and scalable de novo assembly algorithms have hindered biologists attempting to… read more here.
Keywords: bruijn graph; scalable genome; bruijn; construction ... See more keywords
Succinct Dynamic de Bruijn Graphs.
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa546
Abstract: MOTIVATION The de Bruijn graph is one of the fundamental data structures for analysis of high throughput sequencing data. In order to be applicable to population-scale studies, it is essential to build and store the… read more here.
Keywords: addition; succinct dynamic; graph; bruijn ... See more keywords
Optimizing the De-Bruijn Code of Rotary Optical Encoders Preventing From the Photocurrent Blooming
Sign Up to like & getrecommendations! Published in 2021 at "IEEE Sensors Journal"
DOI: 10.1109/jsen.2020.3020974
Abstract: The De-Bruijn sequences could provide appropriate circular arrangements to achieve a single-track absolute rotary optical encoder in the servo motor application. One example used popularly is the maximum length sequences. High-resolution single-track encoders need a… read more here.
Keywords: bruijn codes; bruijn; bruijn code; code ... See more keywords
ploidyfrost: Reference‐free estimation of ploidy level from whole genome sequencing data based on de Bruijn graphs
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.13720
Abstract: Polyploidy is ubiquitous and its consequences are complex and variable. A change of ploidy level generally influences genetic diversity and results in morphological, physiological and ecological differences between cells or organisms with different ploidy levels.… read more here.
Keywords: ploidyfrost; genome sequencing; sequencing data; reference ... See more keywords