Measurement error and variant-calling in deep Illumina sequencing of HIV
Sign Up to like & getrecommendations! Published in 2019 at "Bioinformatics"
DOI: 10.1093/bioinformatics/bty919
Abstract: MOTIVATION Next-generation deep sequencing of viral genomes, particularly on the Illumina platform, is increasingly applied in HIV research. Yet, there is no standard protocol or method used by the research community to account for measurement… read more here.
Keywords: variant calling; erroneous variants; calling pipelines; error ... See more keywords
Performance and Agreement Between WGS Variant Calling Pipelines Used for Bovine Tuberculosis Control: Toward International Standardization
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Veterinary Science"
DOI: 10.3389/fvets.2021.780018
Abstract: Whole genome sequencing (WGS) and allied variant calling pipelines are a valuable tool for the control and eradication of infectious diseases, since they allow the assessment of the genetic relatedness of strains of animal pathogens.… read more here.
Keywords: wgs; tuberculosis; variant calling; performance ... See more keywords
Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing
Sign Up to like & getrecommendations! Published in 2021 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms221910400
Abstract: The highly challenging hexaploid wheat (Triticum aestivum) genome is becoming ever more accessible due to the continued development of multiple reference genomes, a factor which aids in the plight to better understand variation in important… read more here.
Keywords: variant calling; exome sequencing; calling pipelines; wheat ... See more keywords