Comparison of INDEL Calling Tools with Simulation Data and Real Short-Read Data
Sign Up to like & getrecommendations! Published in 2019 at "IEEE/ACM Transactions on Computational Biology and Bioinformatics"
DOI: 10.1109/tcbb.2018.2854793
Abstract: Insertions and deletions (INDELs) comprise a significant proportion of human genetic variation, and recent papers have revealed that many human diseases may be attributable to INDELs. With the development of next-generation sequencing (NGS) technology, many… read more here.
Keywords: comparison indel; calling tools; indel calling; simulation data ... See more keywords
Evaluation of variant calling tools for large plant genome re-sequencing
Sign Up to like & getrecommendations! Published in 2020 at "BMC Bioinformatics"
DOI: 10.1186/s12859-020-03704-1
Abstract: Background Discovering single nucleotide polymorphisms (SNPs) from agriculture crop genome sequences has been a widely used strategy for developing genetic markers for several applications including marker-assisted breeding, population diversity studies for eco-geographical adaption, genotyping crop… read more here.
Keywords: variant calling; bwa mem; variant; calling tools ... See more keywords