BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis
Sign Up to like & getrecommendations! Published in 2024 at "Nature Genetics"
DOI: 10.1038/s41588-024-01664-3
Abstract: Spatial omics data are clustered to define both cell types and tissue domains. We present Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an algorithm that unifies these two spatial clustering problems by… read more here.
Keywords: banksy; domain segmentation; spatial omics; cell typing ... See more keywords
BACT: nonparametric Bayesian cell typing for single-cell spatial transcriptomics data
Sign Up to like & getrecommendations! Published in 2024 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbae689
Abstract: Abstract The spatial transcriptomics is a rapidly evolving biological technology that simultaneously measures the gene expression profiles and the spatial locations of spots. With progressive advances, current spatial transcriptomic techniques can achieve the cellular or… read more here.
Keywords: spatial transcriptomics; bact; cell; nonparametric bayesian ... See more keywords