The Chromosome-Scale Genome of Melon Dissects Genetic Architecture of Important Agronomic Traits
Sign Up to like & getrecommendations! Published in 2020 at "iScience"
DOI: 10.1016/j.isci.2020.101422
Abstract: Summary Comparative and evolutionary genomics analyses are the powerful tools to provide mechanistic insights into important agronomic traits. Here, we completed a chromosome-scale assembly of the “neglected” but vital melon subspecies Cucumis melo ssp. agrestis… read more here.
Keywords: genome melon; melon; chromosome scale; important agronomic ... See more keywords
Chromosome-scale genomes provide new insights into subspecies divergence and evolutionary characteristics of the giant panda
Sign Up to like & getrecommendations! Published in 2021 at "Science Bulletin"
DOI: 10.1016/j.scib.2021.02.002
Abstract: Abstract Extant giant pandas are divided into Sichuan and Qinling subspecies. The giant panda has many species-specific characteristics, including comparatively small organs for body size, small genitalia of male individuals, and low reproduction. Here, we… read more here.
Keywords: qinling subspecies; chromosome scale; panda; giant panda ... See more keywords
Chromosome-scale genomes throw light on plant drug biosynthesis.
Sign Up to like & getrecommendations! Published in 2022 at "Trends in pharmacological sciences"
DOI: 10.1016/j.tips.2022.01.007
Abstract: Recent chromosome-scale genomes from prominent medicinal plants have provided unprecedented insight into the architecture and evolution of some prominent metabolic pathways. These new technologies also facilitate the identification of plant drug biosynthetic genes and would… read more here.
Keywords: scale genomes; chromosome scale; plant drug; genomes throw ... See more keywords
Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing.
Sign Up to like & getrecommendations! Published in 2020 at "Horticulture research"
DOI: 10.1038/s41438-020-00343-8
Abstract: Sweet cherry (Prunus avium) is an economically significant fruit species in the genus Prunus. However, in contrast to other important fruit trees in this genus, only one draft genome assembly is available for sweet cherry,… read more here.
Keywords: cherry prunus; genome assembly; chromosome scale; genome ... See more keywords
Chromosome-scale assembly of the Kandelia obovata genome
Sign Up to like & getrecommendations! Published in 2020 at "Horticulture Research"
DOI: 10.1038/s41438-020-0300-x
Abstract: The mangrove Kandelia obovata (Rhizophoraceae) is an important coastal shelterbelt and landscape tree distributed in tropical and subtropical areas across East Asia and Southeast Asia. Herein, a chromosome-level reference genome of K. obovata based on… read more here.
Keywords: obovata genome; chromosome scale; scale assembly; genome ... See more keywords
Chromosome-scale assembly of the Dendrobium chrysotoxum genome enhances the understanding of orchid evolution
Sign Up to like & getrecommendations! Published in 2021 at "Horticulture Research"
DOI: 10.1038/s41438-021-00621-z
Abstract: As one of the largest families of angiosperms, the Orchidaceae family is diverse. Dendrobium represents the second largest genus of the Orchidaceae. However, an assembled high-quality genome of species in this genus is lacking. Here,… read more here.
Keywords: chrysotoxum genome; evolution; chromosome scale; enhances understanding ... See more keywords
Chromosome-scale, haplotype-resolved assembly of human genomes
Sign Up to like & getrecommendations! Published in 2020 at "Nature Biotechnology"
DOI: 10.1038/s41587-020-0711-0
Abstract: Haplotype-resolved or phased genome assembly provides a complete picture of genomes and their complex genetic variations. However, current algorithms for phased assembly either do not generate chromosome-scale phasing or require pedigree information, which limits their… read more here.
Keywords: chromosome scale; human genomes; haplotype resolved;
A Chromosome-Scale Hybrid Genome Assembly of the Extinct Tasmanian Tiger (Thylacinus cynocephalus)
Sign Up to like & getrecommendations! Published in 2022 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evac048
Abstract: The extinct Tasmanian tiger or thylacine (Thylacinus cynocephalus) was a large marsupial carnivore native to Australia. Once ranging across parts of the mainland, the species remained only on the island of Tasmania by the time… read more here.
Keywords: chromosome scale; thylacine; genome; biology ... See more keywords
Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot “Djulis” (Chenopodium formosanum)
Sign Up to like & getrecommendations! Published in 2022 at "Genome Biology and Evolution"
DOI: 10.1093/gbe/evac120
Abstract: Abstract Djulis (Chenopodium formosanum Koidz.) is a crop grown since antiquity in Taiwan. It is a BCD-genome hexaploid (2n = 6x = 54) domesticated form of lambsquarters (C. album L.) and a relative of the allotetraploid (AABB) C. quinoa.… read more here.
Keywords: genome assembly; genome; djulis chenopodium; chenopodium formosanum ... See more keywords
A chromosome-scale genome assembly for the holly (Ilex polyneura) provides insights into genomic adaptations to elevation in Southwest China
Sign Up to like & getrecommendations! Published in 2022 at "Horticulture Research"
DOI: 10.1093/hr/uhab049
Abstract: Abstract Southwest China is a plant diversity hotspot. The near-cosmopolitan genus Ilex (c. 664 spp., Aquifoliaceae) reaches its maximum diversity in this region, with many narrow-range and a few widespread species. Divergent selection on widespread… read more here.
Keywords: elevation; genome; scale genome; southwest china ... See more keywords
Chromosome-scale genome assembly of Prunus pusilliflora provides novel insights into genome evolution, disease resistance, and dormancy release in Cerasus L.
Sign Up to like & getrecommendations! Published in 2023 at "Horticulture Research"
DOI: 10.1093/hr/uhad062
Abstract: Abstract Prunus pusilliflora is a wild cherry germplasm resource distributed mainly in Southwest China. Despite its ornamental and economic value, a high-quality assembled P. pusilliflora genome is unavailable, hindering our understanding of its genetic background,… read more here.
Keywords: disease resistance; genome; prunus pusilliflora; resistance ... See more keywords