CRMSS: predicting circRNA-RBP binding sites based on multi-scale characterizing sequence and structure features
Sign Up to like & getrecommendations! Published in 2022 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbac530
Abstract: Circular RNAs (circRNAs) are reverse-spliced and covalently closed RNAs. Their interactions with RNA-binding proteins (RBPs) have multiple effects on the progress of many diseases. Some computational methods are proposed to identify RBP binding sites on… read more here.
Keywords: multi scale; sequence; circrna rbp; rbp binding ... See more keywords
CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach
Sign Up to like & getrecommendations! Published in 2022 at "PLoS Computational Biology"
DOI: 10.1371/journal.pcbi.1009798
Abstract: Circular RNAs (circRNAs) are non-coding RNAs with a special circular structure produced formed by the reverse splicing mechanism. Increasing evidence shows that circular RNAs can directly bind to RNA-binding proteins (RBP) and play an important… read more here.
Keywords: crbpdl; data sets; crbpdl identification; circrna rbp ... See more keywords
DeCban: Prediction of circRNA-RBP Interaction Sites by Using Double Embeddings and Cross-Branch Attention Networks
Sign Up to like & getrecommendations! Published in 2020 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2020.632861
Abstract: Circular RNAs (circRNAs), as a rising star in the RNA world, play important roles in various biological processes. Understanding the interactions between circRNAs and RNA binding proteins (RBPs) can help reveal the functions of circRNAs.… read more here.
Keywords: branch attention; cross branch; circrna rbp; double embeddings ... See more keywords