DEMOC: a deep embedded multi-omics learning approach for clustering single-cell CITE-seq data
Sign Up to like & getrecommendations! Published in 2022 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bbac347
Abstract: Advances in single-cell RNA sequencing (scRNA-seq) technologies has provided an unprecedent opportunity for cell-type identification. As clustering is an effective strategy towards cell-type identification, various computational approaches have been proposed for clustering scRNA-seq data. Recently,… read more here.
Keywords: seq data; cell; multi omics; cite seq ... See more keywords
Artificial-cell-type aware cell-type classification in CITE-seq
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa467
Abstract: Abstract Motivation Cellular Indexing of Transcriptomes and Epitopes by sequencing (CITE-seq), couples the measurement of surface marker proteins with simultaneous sequencing of mRNA at single cell level, which brings accurate cell surface phenotyping to single-cell… read more here.
Keywords: cell; cell type; cite sort; cite seq ... See more keywords
Clustering CITE-seq data with a canonical correlation-based deep learning method
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2022.977968
Abstract: Single-cell multiomics sequencing techniques have rapidly developed in the past few years. Among these techniques, single-cell cellular indexing of transcriptomes and epitopes (CITE-seq) allows simultaneous quantification of gene expression and surface proteins. Clustering CITE-seq data… read more here.
Keywords: seq data; cite seq; clustering cite; correlation ... See more keywords
Strategies for optimizing CITE-seq for human islets and other tissues
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Immunology"
DOI: 10.3389/fimmu.2023.1107582
Abstract: Defining the immunological landscape of human tissue is an important area of research, but challenges include the impact of tissue disaggregation on cell phenotypes and the low abundance of immune cells in many tissues. Here,… read more here.
Keywords: islets tissues; cite seq; tissue; immune cells ... See more keywords
Characterization of spleen and lymph node cell types via CITE-seq and machine learning methods
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Molecular Neuroscience"
DOI: 10.3389/fnmol.2022.1033159
Abstract: The spleen and lymph nodes are important functional organs for human immune system. The identification of cell types for spleen and lymph nodes is helpful for understanding the mechanism of immune system. However, the cell… read more here.
Keywords: cell; cite seq; cell types; spleen lymph ... See more keywords